BtaINT0122644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8715676-8716761:+
Coord C1 exon
chr7:8715676-8715774
Coord A exon
chr7:8715775-8716218
Coord C2 exon
chr7:8716219-8716761
Length
444 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
GTCTCTGCTTTGGTCCGCAGGAC
3' ss Score
11
Exon sequences
Seq C1 exon
GTAACATGGGCGGGCGGGAGTCGCTGCTTCTCCTGTCGCTCAGCTGCCGAGAGAGACCGCTGGATCGAGGACCTTCGTCGCCACTTCCAGCCTAGTCAG
Seq A exon
GTCGGTAGTGCGTAAGCTCGGACTTGGAGGCCCCGCCCACAGCCCGGGCCCCGCCCCTTCCACCCAACCCAAATTCCACTCGTGCCAAAACTTTGCCCCTTGGACACATCTGCCTTCCTACACTTTTGCAACCACTCCGAGATCCTCCGCCTATTCCATGAATTACCAGCCCCTTCCACAGCTCGGATTGTATTCAGTCCAAGCCCTATTTGCACCCCAGGGAGTCGCCAAGTTTCCACCCCGCGGTTACTCCTCCATTCCCTGGACCCCGGATCTTTCCGGGAGGACCCAGAAAAGCTAGAGGATCATCGTAGGATCCCCATAGTCCCGCTGTCTTCCCCCAGAGGTCCAGCGAACCCCCTGGGAGCACGCGTCCCGCGCCTCACCTCTGGTGCGCCATGTGGAGCACCGAAGCCACGCTCCTGTCTCTGCTTTGGTCCGCAG
Seq C2 exon
GACAACGTGGAGCGGGAAGAGACGTGGCTGAGCGTGTGGGTGCACGAAGTGAAGGGGCTGCCCCGGGCGGCGGCGGCGGCGCCAGGAGTGCGCACGGAGTTGTGGTTGGACGGAGCGCTGCTGGCGCGCACGACTCCGAGGGCCGGCCCGGGCCAGCTCTTCTGGGCAGAACGCTTCCATTTTGAGGCGCTGCCGCCAGCGCGTCGTCTGTCCCTGCGACTACGCGGAGCGGGCCCCGGGGACGCGGTACTGGGCCGGGTGGCCTTGGCGCTGGAAGAGCTGGGCATCCCCCGGGCGCCCGCCGCGGGTCTGGAGCGTTGGTTCCCGTTGCTCGGGGCGCCAGCCGGCGCGGCGCTGCGGGCACGAATCCGGGCGCGGCGCCTGAGAGTGCTGCCGTCGGAGCGCTACAAGGAGCTGGCGGAGTTCCTCACGTTCCACTACGCGCGCCTCTGCGGGGCTCTCGAACTCGCCCTGTCCGCTCAAGCCAAGGAAGAGCTGGCCGCCGCCATGGTGCGCGTGCTGCGGGCAACCGGCCGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(17.5=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCACTTCCAGCCTAGTC
R:
GAACCAACGCTCCAGACCC
Band lengths:
346-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]