GgaINT0038831 @ galGal3
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6777018-6778111:-
Coord C1 exon
chr8:6778013-6778111
Coord A exon
chr8:6777573-6778012
Coord C2 exon
chr8:6777018-6777572
Length
440 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
GAGTTCTTTCTTCTGTGCAGGAC
3' ss Score
8.39
Exon sequences
Seq C1 exon
GTAACCTACTCCAGCGGCAGTAAATGCTTCAGCTGTTCCTCTGCTGCAGAGAGGGATAAGTGGATGGAAAACCTACGCAGAACAGTGCAGCCGAATAAG
Seq A exon
GTAATAGAAACTGGAAATGAGATTACTGGGGGAACAGAGGTGATATGATTGGGTTTTAGTCCGGTGTAACAGGGCTTCCCACAGATACCTGCTCAATTAATTTAGTCTGGGGAGAAGTCCACTCAGAAGTGTATCAAAAGCTGCTGTGTGCTTTTCCATTGAGTGCAGTAGGTTAAAGCTTTGATTAATAAATCATGTCGCGTTGCTTCCTGATCTCCCCGTGCCTGATTATGATGTTTCAAAGTGGATTTCTGGTGCCCTGCGCCTCAGAAGGGAAGGGATGCGGAGCTTCAGGGTTTAATGTGGAGGCACATGTGGGCAAATTGTGATTCTGTCCCTACCTGTGAAGCAAAGGGCAGCCTTTTGCTGCTTCCCTGTAAGACAACACGTTTGGTATTTTAGAGATTCCGAATGAGAACTGAGTTCTTTCTTCTGTGCAG
Seq C2 exon
GACAACTGCCGTCGAGCTGAAAATGTGCTCCGTCTCTGGATCATTGAGGCAAAGGACCTGGCCCCCAAGAAGAAATACTTCTGTGAGCTGTGCCTTGATGACACTCTCTTTGCCCGCACCACCAGCAAAACGAAAGCAGATAACATTTTCTGGGGGGAGCACTTTGAGTTCTACGGCCTCCCAGCTCTTCACAGCATCACGGTTCACATCTACAAGGATGTGGAGAAGAAAAAGAAAAAGGACAAAAACAATTACGTCGGCCTGGTCAACATTCCCATGGCCACTGTAACGGGGCGCCAGTTTGTGGAAAAATGGTACCCAGTCAGCACACCTACACCCAACAAAGGGAAATCAGGAGGCCCTTCCATTCGCATCAAGTCGCGTTATCAGACCATCACCATCTTACCCATGGAGCAATACAAGGAGTTTGCAGAGTTTGTTACCAGCAACTACACGATGCTGTGCTCTGTGCTGGAGCCAGTCATCAGCGTAAGGAATAAGGAAGAGATGGCTTGTGCAATGGTGCACATTCTTCAGAGCACGGGGAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(12.8=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTCAGCTGTTCCTCTGC
R:
GACCAGGCCGACGTAATTGTT
Band lengths:
343-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]