RnoINT0124506 @ rn6
Intron Retention
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74812261-74814318:-
Coord C1 exon
chr13:74814220-74814318
Coord A exon
chr13:74812816-74814219
Coord C2 exon
chr13:74812261-74812815
Length
1404 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ACTTCGTTGTCTCTCTTTAGGAT
3' ss Score
12.29
Exon sequences
Seq C1 exon
GTCACCTACTTAAGTGGAAGTAAATGCTTTAGCTGTAACTCCGCTTCAGAGAGAGATAAGTGGATGGAAAACCTTCGAAGGACAGTTCAGCCAAATAAG
Seq A exon
GTAATGGTGGCTTTGAATGACAAAAATGCGTCACAAACAGTACATTTATACCACCCCATCTAAGACATATGGACCATGTCAGAAGAGAAAACAGAAGTATAAATGCAGGAACACTAAAGAAGGATTGAGAAGCACACAGCCAGTGTTCTCATCACCTCAGAGCTGGTATGGTAACAACCCACACAAAGCTGGGTCTGTCCTGTCAGCAATCAGTCATGCCTCACAAGAGTCTCAAAGGCCCTACCCCTCCCTGCTGAACTGTTGGCTACTTACAGATTTAGGGGAAGAGCAATTGCAGGTTTCAGTTCTATACCCACCACAGGAGCCCATCAGGCTCTAGTAGATGACTCTAAACACATGGCTATACATATTTTCTTGATTAAACTCAGTGGGTCTCAGGGCGGGGTGGTAAAAGGAATTTGTAAGGAGGGGAATAATGAAGGTGAGAAGAAATTTAAAATGCACATTATACATGTATGAAATTGTTAGAACCAATTCAATAAAAGTCATTTTAATACATCACTTTGTAAGCAGCAAGTCAATGAAAGACAAATGTTATAATATCTTGATTTTATAAATCTTTGTAACTTTTCGTTATTGAAGCAGGGTCTCAGTGTGTAACCAAGACTGGTCTTAAACTTGCAGCAATTTGTCCCAGCCTTGCAAGTGCTGGGATTGTAAGCCACCACATCTGGCTTAGAGCGTGACAGTTTTAAAAGACAGTATAGGCTATGACATTTTGTACTGAAAATAATCTTACTGGAGAATGATATTGTCATTTTACTAATGTGAATGCAGAGACAGAAAAGCTAGGTGACATGCTCTGCCAGAAGAAGGCAAGGTTGTTAGCAGCTTTTTTTCCTATTAATTTTTTTCCTAGTAATTTCCTAGAAATTACTCCAGCCTCATATAGCTGGCTATGGAGAACTTAAATGCTGATATTTTTTAACCCAAGTAAAACAGAAAATATGTGGTTCTGTAAGATTCTTTTAAAAGTATTTTTGATTACATTTATTTGTTTATGTACAGTGTGTGTATCAGACAGGAAGACAGACAGACTGACAGACAGACAGACAGACAGACAGACAGACAGACAGAATGGGAGTGATGAGCACAGGGAAGTCAGAGGAGAATCTGCAGGAGTTGCTTCTTTTCCTTCCACCATATCTGTCCCGGGATCAAAGGCAGGTTGTCCAGCTTGGCAGCAGGTGCAGCTAATGACCACCTCACTAGTGCAAGACTCTTCTGCAGAGCTCTGTGATCCTAAGCAGTGAGGTGGGGTTCCTCTTTCTATATGCTGGCTGTTCTTAGCAGAGGACCATTAGTAATCAGCATTATTCTGAGAAGAAAGCATTTTCTTTCTGATATGTCAGCTTTAAATTCAACTTCGTTGTCTCTCTTTAG
Seq C2 exon
GATAATTGTAGACGAGCTGAAAATGTTCTCCGTTTATGGATCATTGAAGCCAAGGACCTTGCCCCTAAAAAAAAATATTTCTGCGAACTGTGCCTTGATGATACCCTCTTTGCTCGTACAACCAGCAAGACCAAAGCAGACAATATTTTCTGGGGTGAACATTTTGAATTCTATAGCCTTCCGCCTCTTCATAGCATCACCGTTCATATTTATAAGGATGTGGAAAAAAAGAAAAAAAAGGACAAGAATAATTATGTAGGGCTAGTCAACATCCCCACTGCCAGTGTGACTGGTCGCCAGTTTGTAGAAAAATGGTACCCAGTGAGTACACCCACACCCAACAAAGGAAAGACAGGAGGACCTTCTATTCGGATTAAGTCACGTTTCCAAACTATCACCATACTGCCTATGGAGCAATACAAAGAGTTTGCAGAATTCATCACCAGCAACTACACCATGCTGTGCTCTGTTCTTGAGCCAGTAATTAGTGTGCGGAATAAGGAGGAGTTGGCGTGTGCCTTAGTACACATTCTTCAAAGTACTGGCAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917:ENSRNOT00000033324:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(24.6=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTAACTCCGCTTCAGAGA
R:
GCAGTGGGGATGTTGACTAGC
Band lengths:
350-1754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]