MmuINT0132046 @ mm10
Intron Retention
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:157175663-157177744:-
Coord C1 exon
chr1:157177646-157177744
Coord A exon
chr1:157176218-157177645
Coord C2 exon
chr1:157175663-157176217
Length
1428 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTGCTGCTGTCTCTTTTTAGGAC
3' ss Score
13.62
Exon sequences
Seq C1 exon
GTCACCTACTTAAGTGGAAGTAAATGCTTTAGCTGTAGCTCTGCCTCCGAGAGAGATAAGTGGATGGAAAACCTTCGAAGGACCGTTCAGCCAAATAAG
Seq A exon
GTAATGGTGGCTTTGAGTGACAGAAATGTGTCACAAGCAGGACATTTATAACACCCCCTCTAAGACGTATAGATCATCTCAGAAGAGAGAGCAGACAGAATATAAATGCAGGAAGACTGAAGAAGGATTAAGAAATACACAGCCAATGTTCAGCAACCCACACAAAACTGGGTCTGTCCTGTCAGCAGTCAGTCATGGATTAGAAGAGGCTCAATGGACCCTCCCGCCTCCCTGCTGAAGTGTTGGCTACGTATAGATTTCGGGGAGAGCCAGCACAGGTTTCAGTTGTATACCCAGCACAGGAGCCCAGCGGGCTCAAGTGGATGGTTTTACACAGCCACTTGACACATTGGCCGTGCATAGTTTCTTGATTAAACTCAGTGGGTCTCAGAAAGTGGGGGTGAAATGAATGTGTAGTAGAGGAATTTTTAAGGAGGGGAGTAATGAGGGTGGGAAGGAATTAAAAATGTACATTATACATGTATGAAATTGTCAGAACCAATTCAATAAGTCTTTTTAATGCATCACTTTGTGAGCAGCAAGTTGATAAGAGACAAATGTAGTAATATCTTGATTTTATAAATCTTTGTAACTTTCTGTTGTTGAAACAAGGTCTTAGTGTGTAACCAAGACTGATCTTGCAGCTATTTTTTCCCAGCCTTGCTGGGATTATAGGCTAGTGCTACCACATCTGGCTTAGAGCTTGGCAGTTTAAAGAAATTATATGCATGTTATGACATTTTGCACTGAAAGTAATCTTACTGGAGATGATATTCTTGTCATTTTACCAATGTGAATACAAAGATTCAAAAAGCTAGGTGACATGCTTTGCCAGAAGGAGGCAAGGTTGTTAGCAACTTCTTTTTTGTTAATTCCTAGAAGTTAGTCCAGCTTCATATAGCTGGCTGTAGAGAACTTACTATTATGTGCTTACATTTTTTAACCCAAGTAAAACAGAAAATATTTGGTTCTGTGAGATTCTTTTTAAGGTATTTCTGGTTATATATATTTGTGTATGTACAGAGAAAGGGAGGGAAGAAGAGAGGGAGGGAGGGAGAGAGAGAGAATGAATGAATGAGAGAGAGAGAATGAATGAATGAATGAATGAATGAGAGAGAAAGAAAGAGAGAGAGAGAATGAGAGTGAGCACACTGTGTAGGGAAGTCAGAAGTCAGTATGTAGTTGCTTCTTTTCCTTCCACTGTGTGTGTCCTGGGGTCAAGCTTGGCAGCATATGCAGCTAATGAGCCATCTTACTAGTACAAGACTCATCTTCAGAGCTCTATGGTCCTAAACGATAAGATGGTGATTCTTATTTATTGACTGCTCTTAGTAGAAGACCATTAATAATCAGCATTACTCTAAGAAGAAAGCATTTTCTTTCTGATATGTCACCTTTAAATTCAACTTTGCTGCTGTCTCTTTTTAG
Seq C2 exon
GACAATTGTAGACGAGCTGAAAATGTTCTCCGTTTATGGATCATTGAAGCCAAGGACCTTGCCCCTAAAAAAAAATATTTCTGCGAACTGTGCCTTGATGATACCCTCTTTGCTCGTACAACCAGCAAGACCAAAGCAGACAATATTTTTTGGGGTGAACATTTTGAATTCTATAGCCTTCCACCTCTTCATAGCATCACGGTTCATATTTATAAGGATGTGGAAAAAAAGAAAAAAAAGGACAAGAATAATTATGTAGGGCTAGTCAATATCCCCACTGCCAGTGTGACTGGTCGCCAGTTTGTAGAAAAGTGGTACCCAGTGAGTACACCCACACCCAACAAAGGAAAGACAGGAGGACCTTCTATTCGGATTAAGTCACGTTTCCAAACTATCACCATTCTGCCTATGGAGCAATACAAAGAGTTTGCAGAATTCATCACCAGCAACTACACCATGCTGTGTTCTGTTCTTGAGCCAGTAATTAGTGTGAGGAATAAAGAGGAGTTGGCTTGTGCCTTAGTACACATTCTTCAAAGTACTGGCAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565:ENSMUST00000078308:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(12.6=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGACCGTTCAGCCAAAT
R:
TGGGTGTACTCACTGGGTACC
Band lengths:
358-1786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types