BtaINT0122625 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61278942-61280138:+
Coord C1 exon
chr16:61278942-61279040
Coord A exon
chr16:61279041-61279583
Coord C2 exon
chr16:61279584-61280138
Length
543 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACTTTGTTACTTCTTTATAGGAC
3' ss Score
9.56
Exon sequences
Seq C1 exon
GTTACCTACTTAAGTGGAAGTAAATGCTTCAGTTGTAACTCTGCTTCAGAGAGAGATAAGTGGATGGAAAACCTGCGCAGGACAGTTCAACCAAATAAG
Seq A exon
GTAAGAGTGGCTTCGGATGTCCAAAAAACTGTATAACTCTATTAAGCAGTAAGTTGATTGAAGGGAAATACAGTAATATTAATAATACCTTACATTTTACAGAACTTTTAAACACAAACACGTGTTTTATTATTTTGTGCTCAAAATAATCTTACTGCAGACAGTATCATGATTTTATCAGTGTGGACAAGAGGACTCAGAGAAATTACTTGACTAAGTGAGAACCGAGTACAATACACAATAGAAATGGGACTAGAACACAGATTTCTTAATTACTTACATACCTCTATCTCATTTGCAGAAAGCTAATCCAGTTGCCATAAGACTGGCTATATGAGAATTTCCATTACAGGATGTTTAACCCAAGTGAAATAGAATGTTGTGGCTCTCTAAGAGCTTGCTGTTATCTTGAATGATGAGATAGCAATCCCCTTCATTATTTTATGACTGCCCTTAATGAAGTACATAGCATCACTTACTTTAAGAGGAAAATGTCTTTCTGGTATTTCGGCTCTCAAACACAACTTTGTTACTTCTTTATAG
Seq C2 exon
GACAATTGTAGACGAGCTGAAAATGTTCTCCGTTTATGGATTATTGAAGCCAAGGACCTTGCCCCTAAAAAGAAATATTTCTGTGAACTGTGCCTTGATGATACCCTCTTTGCTCGTACAACTAGCAAGACCAAAGCAGACAATATTTTCTGGGGTGAACATTTTGAGTTCTACAGCCTTCCACCTCTTCATAGCATCACAGTTCACATTTATAAAGATGTGGAAAAAAAGAAGAAAAAAGACAAGAATAATTATGTAGGGCTGGTCAACATCCCCACTGCCAGTGTGACTGGTCGCCAGTTTGTAGAAAAGTGGTACCCAGTGAGCACACCTACACCCAACAAAGGAAAGACAGGAGGACCTTCTATTCGGATTAAGTCGCGTTTCCAAACCATCACCATTCTGCCTATGGAGCAATACAAAGAGTTTGCAGAATTTGTCACCAGCAACTATACCATGTTATGTTCTGTTCTTGAACCAGTAATCAGTGTGAGAAATAAAGAAGAGCTAGCCTGTGCCTTAGTGCACATTCTTCAAAGCACTGGAAGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537:ENSBTAT00000020658:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(24.6=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGACAGTTCAACCAAAT
R:
TAGGTGTGCTCACTGGGTACC
Band lengths:
358-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development