RnoINT0124526 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14409792-14410830:-
Coord C1 exon
chr7:14410732-14410830
Coord A exon
chr7:14410329-14410731
Coord C2 exon
chr7:14409792-14410328
Length
403 bp
Sequences
Splice sites
5' ss Seq
CAGGTCATT
5' ss Score
4.45
3' ss Seq
TATCCCACTCCTGCATGTAGGAC
3' ss Score
6.61
Exon sequences
Seq C1 exon
GTAACGTGGGCAGGTGGGAGCCGCTGTTTCTCTTGTCGCTCGAGCGCTGAGAGAGACCGTTGGATTGAGGACCTTCGTCGGCAGTTCCAGCCTAGCCAG
Seq A exon
GTCATTAAGGGGGAGGGGACGGGCACAGAAAACCCTTTCACACCAGCCAGGCCCTGCCCCTTCCACGCCACCCAGTTTGCCCCCAAAACCTGCCCCTGCATCCAGTTCCCCACCTATTCGCACCCCAAGTCCTGTTTACCAAGTAGTCACCAAGTCCTCAGTCCATGACTACGCCTCTGTATCCTAAACTCTAATGTGTGAGACGTTCCCCAAAGCCGGATGTGTTCTGCTTAGCGACCCTCCCGATATTTGTGACTCCAGCCTCATCTCCAAGAGGTCTTGCAATATCCCGGTGAGCAAGGCTCCCAGATCGCGGTGCGCATCAAGGAGTCACAATGCGCATCTTGGGTCTTGGAGCGTAGACATCTCCGACACACCCCTCCTATCCCACTCCTGCATGTAG
Seq C2 exon
GACAATGTGGAACGACAAGAGACCTGGCTGACAGTGTGGGTGCACGAAGCCAAAGGGCTTCCCCGAGCAGCTGCACCCGGAGTGCGTGCGGAGCTGTGGTTGGACGGCGCGCTACTGGCGCGCACTGCCCCTCGGGCGGGCCCTGACCAACTCTTCTGGGCCGAACGCTTCCACTTCGAGGCGTTGCCACCTGCCCGTCGCCTGTCGCTGCGGCTGCGCGGAGCAGGCCCGGCAGGGGCAACCGTGGGCAGGGTGGTACTAGAACTGGACGAGGTGAGCATCCCCCGCGCGCCTGCCGCAGGCCTGGAGCGCTGGTTCCCCGTGCTCGGGGCTCCGGCGGGTGCGGTGCTACGGGCGCGGATCAGGGTACGATGTCTGCGCGTGCTGCCGTCGGAGCGCTATAAGGAGTTAGCGGAGTTCCTCACCTTCCACTACGCGCGCCTGTGCATGGCGCTGGAGCCCGCGCTGTCTGCTCAGGCCAAGGAGGAGCTGGCAGCAGCCATGGTGCGCGTGCTACGAGCCACTGGCCGAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(30.9=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTTCTCTTGTCGCTCGA
R:
AGTTCTAGTACCACCCTGCCC
Band lengths:
343-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]