BtaINT0122645 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8716219-8717243:+
Coord C1 exon
chr7:8716219-8716761
Coord A exon
chr7:8716762-8717098
Coord C2 exon
chr7:8717099-8717243
Length
337 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TGTAACCCCACTATGCCTAGGCC
3' ss Score
4.66
Exon sequences
Seq C1 exon
GACAACGTGGAGCGGGAAGAGACGTGGCTGAGCGTGTGGGTGCACGAAGTGAAGGGGCTGCCCCGGGCGGCGGCGGCGGCGCCAGGAGTGCGCACGGAGTTGTGGTTGGACGGAGCGCTGCTGGCGCGCACGACTCCGAGGGCCGGCCCGGGCCAGCTCTTCTGGGCAGAACGCTTCCATTTTGAGGCGCTGCCGCCAGCGCGTCGTCTGTCCCTGCGACTACGCGGAGCGGGCCCCGGGGACGCGGTACTGGGCCGGGTGGCCTTGGCGCTGGAAGAGCTGGGCATCCCCCGGGCGCCCGCCGCGGGTCTGGAGCGTTGGTTCCCGTTGCTCGGGGCGCCAGCCGGCGCGGCGCTGCGGGCACGAATCCGGGCGCGGCGCCTGAGAGTGCTGCCGTCGGAGCGCTACAAGGAGCTGGCGGAGTTCCTCACGTTCCACTACGCGCGCCTCTGCGGGGCTCTCGAACTCGCCCTGTCCGCTCAAGCCAAGGAAGAGCTGGCCGCCGCCATGGTGCGCGTGCTGCGGGCAACCGGCCGGGCTCAG
Seq A exon
GTGCGGCGCCGCGGCGGGACGAACCCGGGTGACCAGGGGCTGACCGATCGTGTGCTCCAAGGGGGGAGTTGGCGGGGACCAGCACCAGAGTGGTACTTTCGAGGGGCGGGGCACCGTGAGGGGTGGGGTCTGAACTGAGCTTCTGCACCGTGAGACCCAAGTTTCTGCTTTGATGCGGAGGTTCCCGTTTAGTTAAGAACCCCAGCAGCGAGGCCAATGGGCCTGGGCAGCAGCTGCGAGGGGCAGGGCCTGTGCCCCAAAGGTGAGGGACCCGCCAAGAGCAGGGATTCTCACGACTCAGTCCGCGCCCAGCTCAATGTAACCCCACTATGCCTAG
Seq C2 exon
GCCTTGGTGACAGACCTGGGCACCGCAGAGCTGGCACGCAGTGGAGGCCGTGAGGCACTGCTGTTCCGGGAAAACACATTGGCCACCAAGGCCATCGATGAGTACATGAAGCTGGTGGCACAGGATTACCTCCAAGAGACGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGAGCTGGGCATC
R:
ATGTGTTTTCCCGGAACAGCA
Band lengths:
353-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]