RnoINT0124527 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14409204-14410328:-
Coord C1 exon
chr7:14409792-14410328
Coord A exon
chr7:14409349-14409791
Coord C2 exon
chr7:14409204-14409348
Length
443 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTGATCTCTGTCCTGCACAGGCA
3' ss Score
9.4
Exon sequences
Seq C1 exon
GACAATGTGGAACGACAAGAGACCTGGCTGACAGTGTGGGTGCACGAAGCCAAAGGGCTTCCCCGAGCAGCTGCACCCGGAGTGCGTGCGGAGCTGTGGTTGGACGGCGCGCTACTGGCGCGCACTGCCCCTCGGGCGGGCCCTGACCAACTCTTCTGGGCCGAACGCTTCCACTTCGAGGCGTTGCCACCTGCCCGTCGCCTGTCGCTGCGGCTGCGCGGAGCAGGCCCGGCAGGGGCAACCGTGGGCAGGGTGGTACTAGAACTGGACGAGGTGAGCATCCCCCGCGCGCCTGCCGCAGGCCTGGAGCGCTGGTTCCCCGTGCTCGGGGCTCCGGCGGGTGCGGTGCTACGGGCGCGGATCAGGGTACGATGTCTGCGCGTGCTGCCGTCGGAGCGCTATAAGGAGTTAGCGGAGTTCCTCACCTTCCACTACGCGCGCCTGTGCATGGCGCTGGAGCCCGCGCTGTCTGCTCAGGCCAAGGAGGAGCTGGCAGCAGCCATGGTGCGCGTGCTACGAGCCACTGGCCGAGCGCAG
Seq A exon
GTGAGAAGCCCTGACTACGCAGACAGGTGGGACAGATAGCGCTTTCTAAGTTGTGCTGAAGAGGAAGAGCCTGGATTGTCCAGCGAGGTGGGACACCGGGAGGGGCGGGACCAATATTTTACCAATGAGGGACGACGAGTGCTGTACGTCTAGAATTTCAGCTGCTAGGGACCTGGCCTTAACTTGAACTGTGAGAGGCAGACCCTGAACTTCAAACCGGATGAGTTCACGCTGAACTTCAGCGAGTCGGGCGGGGCTGGAGGAGAGCCTCAGGCTAGTAGGCACCTTTTCTGCAGCGAGAGGTGGATATTGTAGCCTCAGCTAAAAGCTGAGGGCTGTGCCTGAATATCAGCAAAAAGGCACGAGGCCTGTGCCTAGGTATGAGAGATGAGCCGATGACTGAGATTCCCAAGATCATTCAGTGTGATCTCTGTCCTGCACAG
Seq C2 exon
GCATTGGTGACAGACCTAGGAACCGCAGAGCTGGAGCGCTGTGGAGGCCGTGAAGCGCTGCTATTCCGAGAAAATACCTTAGCCACAAAGGCCATTGATGAATACATGAAACTGGTGGCACAGGAGTACCTCCAGGAGACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGGACGAGGTGAGCAT
R:
TTCTCGGAATAGCAGCGCTTC
Band lengths:
349-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]