GgaINT0038832 @ galGal3
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6774594-6777572:-
Coord C1 exon
chr8:6777018-6777572
Coord A exon
chr8:6774739-6777017
Coord C2 exon
chr8:6774594-6774738
Length
2279 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CATCTGACCTTTTCCTTCAGGAC
3' ss Score
10.7
Exon sequences
Seq C1 exon
GACAACTGCCGTCGAGCTGAAAATGTGCTCCGTCTCTGGATCATTGAGGCAAAGGACCTGGCCCCCAAGAAGAAATACTTCTGTGAGCTGTGCCTTGATGACACTCTCTTTGCCCGCACCACCAGCAAAACGAAAGCAGATAACATTTTCTGGGGGGAGCACTTTGAGTTCTACGGCCTCCCAGCTCTTCACAGCATCACGGTTCACATCTACAAGGATGTGGAGAAGAAAAAGAAAAAGGACAAAAACAATTACGTCGGCCTGGTCAACATTCCCATGGCCACTGTAACGGGGCGCCAGTTTGTGGAAAAATGGTACCCAGTCAGCACACCTACACCCAACAAAGGGAAATCAGGAGGCCCTTCCATTCGCATCAAGTCGCGTTATCAGACCATCACCATCTTACCCATGGAGCAATACAAGGAGTTTGCAGAGTTTGTTACCAGCAACTACACGATGCTGTGCTCTGTGCTGGAGCCAGTCATCAGCGTAAGGAATAAGGAAGAGATGGCTTGTGCAATGGTGCACATTCTTCAGAGCACGGGGAGAGCCAAG
Seq A exon
GTAAGAGTGGGCGGCCCCTGCCAAAATGGCTCCTTCCTCCTGATGATAGGTGATACCTTCTCAACTATTAGCCTGTAGAAAATAGGCTTCCTGGGCTGGTGTGACCGCAAGCAGCCACACAAGGTGCCCGATGGGCTAAGGCTGAGAAGAGGGCCTCAAAAGTGTTTCTAAAGACTTGGCGATTACATCCACCAGGAAGGCATGCAAATAGGTACCACACCAACACAAATTAAGTGCCTGAGTTGATAGGAAGGTTAAAGATACTGTGTACAGAGCGTAAGTGGGAGGACTGAAAAATGAGAGCCTGCACTCTAAGTATTCAGGAACCTTTTCTGTGTTTCTAGAATTGTGATACTAAATAAAGAGATAAGTAAGCAAGAGTTAAATAGACCAGAGAATAACTTCTATAAATACATCTCCAATACAGTGAGCAGCAGCATGTTGATTCAGTGCTAAGTCAGCTAATCGACGTGAACATTGATTTGGTCAGCAATTGAACAGCCATTTGGAGAATCCAGGCTCAGTTAATGGTGATCCCACCTGCCCCAAGAACGGTATTAGGACTTCCAGGTGCACGCTGGTGGTTCTCTGTAATGCAGTAATTGATGTGAGCCCTGGTTTCTTTGAACAGATTGTGGGAGAATATCCTGCAGGATTCCAGAAATTCTGAGAAGCATTAACAAGCATTGATTGATCCAGGTGCTGCCTGCCAAGTGGCTGTATGGGAGTAGTACCAAGCTGTAGCCAGCTCCTTCCAGTAATGCCAGCTAGAGCAAGTTAAGCACCACTGAGCACAGGCTGGAGTTGGAGGTGTGAGACAATGACCACAAGCAGCAGTCAAGGGACAGCTTAAAAATTAACTGCTCTGAAAAGATCCCATTGTAACTCTCAAGAGTTACCACTCTCTGCTGTTCCCTGTTGCTTGATGTAGAGCTCAGGAAGGCTGGTGCTCTGTGGCACTGCGTGATTCCCTTGGTTACTTAGCAGCTGTTTGTCTGACCTAGAGAGGTTGGTAGCTGGGGCAGCTCCTGCAGAGCTGTGCTGAAATCCTCCTGGAAGGTGGGCTCTGGTTTATTTATCTCCAGCAGGTAGATAAGTCACTGTGATAACATTGCCCTCTTAGTGCCTGTAAATTTGAAGCTCTCTTTGCTGGAAGCACTGAGTTCCTTAGGCTGCCATAGCCTTAATCTGCAAAGAAGGTACCTTTCCATGCCACACTGTGGTGGTGCAGCTGATATTTGCGCCAGGTGAAAATGAAAAGAAGCAGTAATAAGGGGGTGAAAAACAACAGTCCTGCAGGTGTTTTTCATACGTTCCTATCCTATATCATTTGTTCTGGGTATTTTGCATTCATATGGCAGCACCGCATCTTGGATTGCATCCTTAACGGGGTTACAAATCCTTACCATAGTGCTCTTCAATCTGCTGTCACTCAGCCCTAATTGATGTCACATTATGATGTTTCTGTTTTTGTTTGCTTTGGGTTGTTTTTTTTTCCCTTGGTTGGTTGGTTTTCGGGTGGGAGGGTTGGAAGGGTGTTAAGAGAGAGCGGTGATGGGGAGGAACGGTGGTTCCTCTCCTGGGGAACTCTGCAGGGGCTGCCGTGGGCTGCAGAGAAACAGGAGTGTTCCTTGTGAAATGCTGAGCGTCCTCGACTCAAGTGGAGCTGTCGCTTCAGGAAAGAAGTGTGCCTGTAGAGCTGGACCCTGTATCAAGGGAGAATTCACTGCATCGAGACTCGCCCGTTGTCCTTTGAGTGCAGGACAAGTTAAGCCATGCAGATACGCAGCAGCCACATCAACTTTCTTCCCAAATCCTGAATCGCTTCTCTTTTCTGAATTAAATTGTTGTAAGCATTTCTTCATGCTTCTCAAAGCTGTGAGAATTTGTGCAGCACTTCTGTTTGGGATTTTTAAATCCAAGGTTGTATGCAGTATTCAGTATTAAAATACAAATATAATATCACAGTTGGTTTCAGCAGACTAAACCGATGATAAACCAACTGATGAGGATTTCTGTTCAGGATCTAAACTGAAACACAAGCTTGGCTGTCAAGGCTTGCTTTGCTTCTCCCTTTATAAATTGTGATTTACAATACTTTTAAATATAATAAATACAAGAGGAGCTCTGGCTGTACAGGTATATGGAGCCCTTGTCCCAAGCTGGGCAGTTGTTCCAGTAATTCTCTGGCTCCTCTGCTTTTCCTTCCTTCTTGGCCTCTGCACTTAGCCTGGTGTGAGTCTGGTTAAGCTAACCTGCCATCTGACCTTTTCCTTCAG
Seq C2 exon
GACTTCCTAACGGATCTGGTGATGTCTGAGGTGGATCGCTGCGGGGAACACGATGTCTTGATCTTCAGGGAGAACACACTTGCTACCAAAGCTATTGAGGAATACCTGAAGTTGGTAGGGCAGAAGTATCTCCATGATGCGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=WD(100=43.8)
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]