HsaINT0137709 @ hg19
Intron Retention
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:9874]
Coordinates
chr1:178411810-178414797:+
Coord C1 exon
chr1:178411810-178412364
Coord A exon
chr1:178412365-178414652
Coord C2 exon
chr1:178414653-178414797
Length
2288 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATTGAACATTATTCTACCAGGAT
3' ss Score
3.98
Exon sequences
Seq C1 exon
GACAATTGCAGGCGAGCTGAAAATGTTCTTCGTTTATGGATCATTGAAGCCAAGGACCTTGCCCCTAAAAAGAAATATTTCTGCGAACTGTGCCTTGATGATACCCTCTTTGCTCGTACAACCAGCAAGACCAAAGCAGACAATATTTTCTGGGGCGAACATTTTGAATTCTTCAGCCTTCCACCTCTTCATAGTATCACAGTTCACATTTACAAGGATGTGGAAAAAAAGAAAAAAAAGGACAAGAATAATTATGTAGGGCTAGTCAACATCCCCACTGCCAGTGTGACTGGTCGCCAATTTGTAGAAAAGTGGTATCCAGTGAGTACACCTACACCCAACAAAGGAAAGACAGGAGGACCTTCTATTCGGATTAAATCACGTTTCCAAACTATCACCATTCTGCCTATGGAGCAATACAAAGAATTTGCAGAATTTGTCACCAGCAACTACACCATGCTGTGTTCTGTCCTTGAGCCAGTAATTAGTGTGAGAAATAAAGAGGAGTTGGCTTGTGCCTTAGTGCACATTCTTCAAAGTACTGGCAGAGCCAAG
Seq A exon
GTAAGTGGAAAAGGGGGATTGCAGTACCTGAAGTCTCTTCCCTACCTTTCATAAACCAAGATATGGATATTGTAGAAATCCAAATTAGAGAAATGTGCTTTACTATTGGTCAAAACAAGAAGAATTAAGAAGAAAACCTATTAGATCCAGAAAAGATGAAGATTATAAAACTAAACAAGTAAAATGGAGAGACCAGCAAATATTTAAAGCCAATTTGCATGAAACATAGATAACACAGCCAGCTCTTTCTTGTCTGACAAAATAAATGGTAGGATTGGCACGATAACCCTACAGCATGTTCAAGGTTCCTTATCTTTAATTTAGTTCTAGAGTGTTGTATGGTGGTTTTCTTCCTCACTGTATTTTATTTAAGTTTAACTGATGACTGTATCCTCTAGGCACAGAAGGAAGTATTCCAGAAGCATATTGAGTATTAGCAAGAGTCTTTGTGGGATTAAAATCTATATTTAGAATAAAAATCCAAGGGATATGATACAATTGGTAGCTGTTTCATGATACACTTATTTCACCTTGGATAGAAGTAAAAACTCAGGAATATTTTTTATTTAAAGGAGAAATATGCTGGTTGTGGGAAGAACAAAAACTAGTTGAGAGAGTCTTTGACCTATGAAGGATATTAACTAGGAAGAGTTACCGTTATACTGTATGCAAACTGGTCATGATAAAATTACATCTCAGATCCAAAGAAACTCACAGCTAGAATAATGTATTTAGAACCAAACAAAGTACTATTACTATTTCTTGATATGTCGGAATATATCAATATATTCAATATTTAGTCTCTTATCTGGCTTCTATGGATTATAACTTTTGTGTTTAAATTTACTTATGATAATCTTGGGCATTCTGTCATTAAAAAGCTTATGAGTTTGGAGCGAGGTGTCACTGAAATTTTGAATTGTATGGATATATTTCTACTTTTCAGTTGCTCAAGGTTCAGAATATACATTAAGACTTTTTTAAATGACTTAATACTGATTTACGTACATTTTAGGTAGAATAAACACCCATTTAAAGTGGAAAAGTTCAGTAAGCTTTGACCGATTTTGCACCCATCGAAACCACCACTATGATCAAGATACAGAATGTTACCGTTACCCCCAAGAGTTTCCTCCTGTCTCTTAGCATTAAGTTTAATAGTGATTCCTAAGTCTACAACTCTGTTATACTGTTAAGCTGCCCCAGAGTAAGTCCCATTGATGTTTAAAATGCTTAATTTTAAAGTAAAAGTAAATCAGCATATTCCTCCTATTTTGGCATTTGCAGCCCTTGAAATATCCAATAATTATATAGCATTCAAAATATATGATGTTATCACATTCAAACTGAACAACCAACATTGAGCTTTACTAGAAGTTCTTTAAGACTGTTGAGGAATGAAGCAGCTGTTTCTTTGCACCTTTATTTCCCCTTATGCTATCCTTCTGGATTGATGGATGGATGGACGGATGGATGGGTGGGCGGGCAGACAGAAAGATAGCCTAGACAATGACTTCAAGTGATGAGTTCAGTAGATTCTACATTGACACTGTGGACCGATTTGTAAGTATTATATATTGAACACCTAATATATGCCAGAAACTGTTAGGTGCTGGAGATATGGTGGTAAACAAAAACAGAAACTGGTTTTCTGGGGAAAATAAATATTAATCAAGTAATTACAGAAATAAATATGATTACAGTGAGAACTACAGAGGATAAAAAGAGAGATGATACTATGAAATGGAGCAAGGGGAGCTGACTAATGGAGTTCAGGGGCAATGTTGGTCAGGGACACCTTCACTGAGGAAATGATGTGTGAACTAAAATCCAAAGGATCCCAGGAATGAGCTACCTGACAGTGGGAGTGGAAGCAAGGGTGGGAGCAGAGCAGAACTGAGAACAGTATTTGGAAAAAAAAAAAAAAAGGCTTTGTGGTGAATAGAGAACATTGTGTGTGTTAGAAAGGGCTTGGTGTATTAAAGGACCTAAAAAGAAAAGGTACAAGGCTTGAAAGGTAGACAGAAACCAGAAAATATAGGGACTTGTAGACTGCATTCAGAATTATGGCCTTTATCAAAAGTGCAATGGAAAATCTTTGAGGGAATTTTAAATGTAGGGGTAGGAACACCTAACATTTTATCCTGATTGCTTTTTTTCCTTTCAGATGAATCTGATAGCTTTAGTTTTAAAGCAGCATTTCCAGGATGTCTGATATTTCAAAAGTCTCTTCTAATGTGTATTATTTATTCAGTTGCTTTCTGCCTGATTGAACATTATTCTACCAG
Seq C2 exon
GATTTTCTGACTGACTTGGTGATGTCTGAGGTGGATCGTTGTGGAGAGCATGATGTCTTGATCTTCAGAGAGAACACTATTGCCACCAAATCCATTGAGGAATACCTCAAGTTGGTGGGACAACAGTATCTTCATGACGCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391-RASAL2:NM_004841:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=WD(100=43.2)
A:
NA
C2:
PF0061614=RasGAP=PU(27.3=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)