BtaINT0123169 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016367 | RBM18
Description
Bos taurus RNA binding motif protein 18 (RBM18), mRNA. [Source:RefSeq mRNA;Acc:NM_001034324]
Coordinates
chr11:93107615-93110798:-
Coord C1 exon
chr11:93110672-93110798
Coord A exon
chr11:93107702-93110671
Coord C2 exon
chr11:93107615-93107701
Length
2970 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TTAATCCCTTTCCTGAACAGGAA
3' ss Score
10.78
Exon sequences
Seq C1 exon
ATACCATCTCCTCAGGCTGCTGCAGAAGTTTGGCACGGTGAAGCAGTTCGACTTCCTCTTCCACAAGTCAGGTGCTCTGGAGGGACAGCCTCGAGGGTACTGTTTCGTCAACTTTGAAACTAAGCAG
Seq A exon
GTAGCTGAACTTCTCCCCCTTGCCCAGTGCTTAGCCTCTTGTAGTTAATCTTTGCAGCCCTCCTGACTGCTCGAATAGCAGTTCCTTGTGGGCAGGAGCCATGTCTGACTCGCCCCCATATGCTGGGCTCTGAGTCCTAAAGGAGACCCTCAGTCAGCAGCCGAGTTAGCGGCCAGCTTTCAAAGTCTGCCCTTGACCGGCTGGCAGGCTGAGGCGGCTGACCTACTTTCCTGGCCAGATGCTCTGGGGTACCCACACTAAGCACATGGATGTCCTCCTCCCTGTTCTCTTTTGTTTGGTACTTTCGTGGCTGGCCAACAAAGCTGCCTTTTCTTTCAGAGTTTGGCCCCATGGTGCAGAAACCCTCCCTGTCTGTGGTGAGCCACCCACAAACTCTCTTTTATTTTGATTTCTTAAAAATGTATCCTCCTCCTCAACATCTCCGAATAAATGTGGACAAGTTTGAATATATACAGAAAAAGAGAGCGCCAGCTTCAACCGTGGTGTGTCCACGATCTACTGTTAAAATGTAGTCCTGAGAGTGGACATGCATTGATAAAGGACTTGAATTTGAATGTTACTTAATATAGAGACACTGTTTATAGTTCTGTGACTATTAGTGATATGTGAGAATGTTGCCTAGTTTCTGTTTTACTAATGATAATTGTATTTGGATATTTTTCCTATAAAAGTAATACTTGTTTCTTATAGATAAAATATAGATAAGTAATTTCATATATTAGTCTAAAACCCAGAAATAATCAGTTTTCAGTATTTAGTTATATATCTTTCTAGTCTCTTCTTTCTTCACATTCACACACACATATACATAAAATGACAAAAACACATGTGCACAATTTAAAAGAACACATGTACAGCTTTTAACACACAAATAGGATCATGTATCCTATTTACCACTGAAAGTAAATTAAAATTTTTCCTGTCATCCAGTACGCATCAAGATAACATTCTGTATCATATTGTGGTTTCACTGGTGTAGCTATAGATAGATGTAAAAATTCACTGATCTATAATACATTTTATTATTTAGGCCTCAGTTTAAAAACTAACCAGTATCATCTTTGATGACTGCATAATATTTTATTCTGTGAATATGTGATAAGTTACATATCTAACCTCCAAATGCGTAAGCAATGTGGTGAACATCTCTAGCTCTATGTGAATATTTACTGTATTCATGGAAATGGAGTGGTTGTCAACAAAGGCCATGAATTTTTTCCTTAATATGACTGCCAAATTGCCTTCAAGAAATAATGTGTCAGTATGTTCTGAGACTATCTGAGAATATCATTTGTCCCTACCAGTGCTAGGGATTTCTTAAAACTTTCCTCTAATTTTTGCAAATGTGATAGGCAATAAATGATACATTATTGTTGTAATTATTCAAGGTTTATTTTTTTTTGAGGGAACTGAAAGTGTGCTCTATATAGTTTGTATTCTAAAATACTTAATTCTTCCCTAATGATAGAGTGTGTTGAGGATTTTTACATGATCACTAAAATCATTGGTCATGTTGAAGATAGATATTGGTTTAAAAACACTAAATTGGAAGTTACAAAGATTATTTCTGGCTCTTTTATTTATTAACTTTGGGCAAGTCTAACTTATTTTGACCTCAGTTTTCATCTAAAAATGGAAATTAAAAGTACACACCCTCCTTACCTTTTAGGAAGTTAAGAGAGTAGGTGAGGGTTCATATGAAAGCATATTTGGCATTTAATAATACTGTTGGATACATGAATTTTGGAACAAGTTAGAAAGATAGGAAATTATTTTTAAAACTATTTATCACCTGCTGGCGTCTTATGACTATTGATGCTACAGAATTAATAGTGTCATGTAAATTCTAATTCACTAAGTGAAACTTAAAAGAAGAATAAAATATCTCCTCTGTCCCTCTAACTCTGTGTGCCATAGTGAGGCACAGATGCCAGTGAGTACCCACAATGGGTACTCAGATATCTGTTGGATATCATACTGGTAAGACCCAGAGGAATAAGAGAATCACCAGTTAAACCAGACTAGAATGTTTTATGCTGAGGCCTCGGACTCTCCTTGTTCCTCTTCCTGTTCCTTAACAGGCTCTTCACTCCCAGTAAATGTGGGTAACACTTGGCCGAATGCCTCCTGGATACAAATGGAGCGGAGGAGGCTTGGCAGGATGGAAAAGTACAGCCAGGCTTCCTGGGAATGTCCTCGAGTGCCTATTATCCAGCCTCAGGAATTCCTTTCAACCTCGTTGCTCCCGTATCTGATGGGGAAAGGGTCAGGGAACTTCTGGCTCTGAAAGCCAGGTGCAGAGATTGGCTCACACAGATACCTTGCTCATAGCCTCTTTGACTCACTCCTGCTTTTTCCGGCCTGGTTTCCTTCACTCCCATATCCTTTGAAGCCCTGTAGCTTCACTGTAGCTCACTTTGGATTCAGGGTGTATCAGCCCTGGTCCAGGATATAGTGTCAGAGTCCCCAGGAGGAGTACACTTTCTTGACGTAGTAGATGTTACTCTTAACTTACAGAACTGTGTAGAAAGATATCACCCAGTAGGGACAACACTGTTAGCTGACGCTGGTTGAGTGCACACCATGTGCTCCATTCTTTACATGTGCTCTTCGACTCCTCTGACCACTTCGGAACAAGCAGTATCCATATTTTGCAGGCGAAAAAGCTAGTATCCAGAGAGATGAAATGACCTGTTAAATATTATACTGCCAATAAGTGGCAGGCAAGATTTAAATTTTTGTTTGACTGGGTTTACAAAATCTCATGCCCAGGCAGGATTTAAATTTTTGTGTGAGTTTACAAAGTCTCAGACCCTTTTTATTATTCTGCCTTTTTTTTTCCCCTTGTAAATCCTTTGCCACTTGTTTACCAAAACAATAAGAAATTCAGCCATCAAAGCTAGTGAGACATTTGAGTCTTCTACTGACATTAATCCCTTTCCTGAACAG
Seq C2 exon
GAAGCAGAACAAGCCATCCAGTGTCTGAACGGCAAGCTGGCCCTGTCTAAGAAGCTGGTGGTGCGCTGGGCACACGCTCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016367:ENSBTAT00000021769:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development