RnoINT0125048 @ rn6
Intron Retention
Gene
ENSRNOG00000006763 | Rbm18
Description
RNA binding motif protein 18 [Source:RGD Symbol;Acc:1307411]
Coordinates
chr3:15450636-15453678:-
Coord C1 exon
chr3:15453552-15453678
Coord A exon
chr3:15450723-15453551
Coord C2 exon
chr3:15450636-15450722
Length
2829 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCTTGTCCTGTCTTGGACAGGAA
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATACCACCTCCTCAAGCTCCTCCAGAGGTTCGGCAAGGTGAAGCAATTCGATTTCCTCTTCCACAAGTCGGGTGCTTTGGAGGGCCAGCCCCGAGGGTACTGTTTTGTTAACTTTGAGACTAAGCAG
Seq A exon
GTAATTGAGCTCCTCTACCTCTTACAGTCTGCACTCTGTCGTAATCCGTTCTATATCTCCTGACCACCAGACCTCATGGGCAGGAGTCATGTCTGGTTATTCTCTGTGCACCTCACTCTGAGCTAAAGGCTGTGTCCTTCACTAGTGAATGTAAGTAGTACAGCCTCACAAACACCCTCTCCCTGGGTTCAAGAGAGTTACAGACTGCTGAGGTACAGATTCAGTGAGACTGCCACAAAAAACAAGGTTTGAGCACTGAGGGATGCATTCAGCGTTGGCCTTACCACACACTACTCGTATTACTCATGTGCATACATAATTTATATACATGTGTACAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTTTGTGCGCGTGTGCATGCTTGTGGGTCTCAGTCTCAGAAGTTACATACAAATTTTGTGTGATATTGGGATTAAACCCAAGGCCAGTATATCTTCTCCCCCCACCCCCCTTTGAGACAACCTCACTATGTAATCCCTCACAGAGTGCTTGCCTCTGCCTCCTCAGAGCTGGAATTAAAGCCATGCTCCATCATGCCTGTCTGAACCCAGGGTTAATATATGCTAGCTAGAGAAGTACCACTGAGATAACCCTGCTCAATAACACATGTTGATCCTCAGTGATCTGTATCATAGATTTATATATTTCACATGTGACTTGGAGTACAGTTCAGAAGTAAGCAGAAGGTGCAGCATGGGGTGATGACACTTGTGATCCCAGCAGTCAGGAAGCAGATGCAGGTGGGATCTCTGAATTTGAAGCCAGCCTGGTCTTATATAGTAGTTCTAATCCAGCCAAGGCTACATAGTGAGGCTCTGTCTTTAAGAAAGAAAAAAAAAAAAAAAAATCCTGAATTCTGATGACTGCATAATGTTATATGGGTTTGTTACCTGAACCCCAGTTGTTAGTTATTTAACTCACCAGCAGTGACTGACTGTATAGGCATGATGGAGTGGGTGTTGTTATAGCTCTATGTGCATCCACTGCATTTAGGGAAATGGAATGAATAGCATCACCAGGAGGCATCCATTTTAGCCAGGCGTAGTGCTGAGCTTTATCCTAGTGCTTCATCCCAGCACTCGGGAGGCAGAGGCAGGTTCATCTCTGAGTTCCAGGCCAGCCTGCTCTAGAATGAGTTACAGGACAGCCAGGGCTACGCAGAGAAACCCTGTCTCCAAACAAAACAAACCAGACAAAGGCATAATTGTTGTTAATGTAGTTGCCACAGCTGGGCCTGGCTGCACTGACAGTAAATCCAGCCCTGGGAGAAGGAGGCAAGGAGACTGAGAGTTGGAGGGCAGCCTGGACTACATAGTAAGGAAAAAAAGATACAGTTGCCACACTGACTACCAGAAGCAATGTATCAGAGTTACTTCTAAGGTCGCACAGGGCATCATTTATCCTCACCTTTGTCCACTCCTTTTTGGAGCAATTAAAGACTGTTCATGTAATAGCCATTTTTAAGTGTTTTTCCTTGATAGAGTGATGAGGATTCTTGCCAACAACTAAAACCAGAGCTCATGGTAGGGGCATGTAATATTTAAAAACCCTGGCCTAGTAGTCAAAACATACTTTATATTCCTGTATTTTTTTATTTTTTAACTTTGATCAAGTCTCTTTTGGCCTCAGTTTTATCTAAAAATGGAGAAGGGTAAGAGGTTCTCTTTTGCAAATTTGGAGAGACTGAGAATATGTAAGTGTAGATGTGACAGTACAGTGAACATATAGTATTAAATTTGTGAACTTTGAAACAATGTACAGAGATGGTAATTGTTCTTTTAGAATGCTTATCCCTTGTTGGCCTCTACTGCTGCTGCTACTTTAGGGCTAAGAGAACATTAAGGACATTGTAATCCCACAAGTGAAGCAAAGCGTGTCTCCTGTCTCGCTCTGTGTGCTCTGGTGGGGCCTTCTTACAGCGGGTGAGCAGCCAGTGCCTGACACACAGTGCATGGTGATGAAAGTGCATGGAATAGATGGCTGCTGAGTGCTACAGACTCACCGCTGTCCAAGTCTTCCTTTCGGGCCTCTTCACCCCTACTGGATGTGAGTTCCACTTAGTTGAATGCCTCATGGATACCAGTGGTTTGTCAGGATGGGAAGGTTTGCTGAGAGTGACTTCTCAGCTTTGGCGTTCCTTTTAACCTTGTCGCTGCTATGTCTGCTGATGAGAGGGTCGGGAGAGTTTGTGCTCTGAAAACCAGGCGCATAGGTTGACTCACAGATGCCTCGCTCAGTCTCTTGGATTAGCTCTGCCTTTTCCAGCCTGATTGCCTTCTTATCCTTGAGCTGTAGTCAAGGATATAACTCCATAGCTCCCGAGTGAGCACTGGTTCGTGATGTAGTCTGCACACCGGCTAACGCATGTGTGTGCAGAAAGATAGCACCTGAGGGGGCAGTGCTGTCAGCTCACACTGGAGCGCCTCCTCTGTGCGTCCTGCTTTTCATGCCCTCTGAAGACTCACAGCCACCCCTCGGGAACGAGTAGTAGTGACCATATTTTACAGCTGACAAATGTAGAGACTTTAAATACCTGCAAACCCTGCACTGCCAACAAGTGACAGAGGATTTGAAATCTTATTTCGTTTTTAAAATTCAAGATGTTATTGTTGTTTGACCATTTGAAATTATAAGCCAAGTTGAATTATAAGTCCAGTTACCAAAAGCAATTTGGTTAGAAACCCAGCTATCGAAACTTACTGAGGCCCTGTGAGAGTACAGGTAACTGATAAGTGTTTGAATTTCTGACTGACTCTTGTCCTGTCTTGGACAG
Seq C2 exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTGCGATGGGCCCACGCTCAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006763:ENSRNOT00000009706:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]