MmuINT0132626 @ mm10
Intron Retention
Gene
ENSMUSG00000026889 | Rbm18
Description
RNA binding motif protein 18 [Source:MGI Symbol;Acc:MGI:1915139]
Coordinates
chr2:36122852-36127251:-
Coord C1 exon
chr2:36127125-36127251
Coord A exon
chr2:36122939-36127124
Coord C2 exon
chr2:36122852-36122938
Length
4186 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TCTTGTCCTGTCTTGGGCAGGAA
3' ss Score
9.17
Exon sequences
Seq C1 exon
ATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTGAAGCAGTTTGACTTCCTCTTCCATAAGTCAGGTGCTTTGGAGGGCCAGCCCCGAGGGTACTGTTTTGTTAACTTTGAAACTAAGCAG
Seq A exon
GTAATTGAGCTCCCTCTACCTCTTATAGTCTGCACTCTGTCATAATCCATTCTACATCTCTTGACCACCAGACCGCACGGGCAAGAGTCATGTCTGGTTATTCTCTGTGCACCTCACACAGAGCTAAAGGCTACGTCCTTCCACCAGTGAATTTAAGTAATACAGCTTGCACAAACATCCTCTCCCTGGTTTCAACAGAGTTCAGGCTCTTGAGTTACAGATTCGGTGAGACTCTGCCACAAAAAAACAAGGTGATAAGCAGTGGAGAAATGCATTCAACATTGGCCTTACCACTGCACGTGCACGGGCCTACACACACTACTCTTGTGCATACATAATTGATATACACCTGCACAAATTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGTGAGTATGCTTCTCAGTCTCAAAAGATGCATACAGATTTTATTTGTGTGTTTGGATTAAACCCAAGGCCAGTATGTCTACTCCCTTTTTTTCCCCTTTGAGACAATCTCACTATGTAATCCCTCACAGAGTGAGGAATTCTCAGAGTGCCTGCCTCTGCCTCCTCAGTGCTGGGATTAAAACCATGCTCCATCATGCCTGTCTGAACCCAGGATTTAATACATGCTAGCTAGATAAGTACCACTGAGATAACCCTGCTAAATATCACATGTTGATCTCCAGTGATCTGTATCACAGATTTGCGTGTCACATGTGACTTGGAGTACAGTTCAGAAGGAAGCATCATGTGCTGTGTGGAATGGACCACGCACTCAGGATGCAGATGCAGGTGGGAGCTCTGCACTTGAAGCCAGCCTGGTCTTATATAGTAAGCTCCAGTCCAGCCAAGGCTACACAGTGAGGCTCTGTCTCACAAAAAAAAAAAAAAAAAGAAAAGAGAAGAGAAGAGAAATAAATATATATATCCTAAGTTCTGGTGACTGCATAGTCATTATTTATTTGAACCCCAGCAGTGACTGACTGTATAGACATTATAGAGTGGGTATTGTCATAGCTCTATGTGCATCCACGCGTTTAGGGAAATGGAATAGAGGGCATCATTTTTAGCCAGGCGTAGTGGTGTGCTTTATCCCAGTGCTTGGGAGGCAGAGGTAGGTGGATCTCTGAGTTCAAGACCAGTCTGGTGTAATGAGTGAGTTACAGGACAGCTAGGGCTACATGGAGAAACCCTGTCTCAAAAAAACAAAACAAAAACAAGGCAAAAGCATAATTTCCCTTGATGTAATCGCCACAGCTGTGCATGGTTGTACATGACTGTAAGTCTAGTCCTGGGGAGACTAAGGCAAGAAGATTAAGAATTGGAGGGCAGCCTGGACAGCACAGTAAGGAAAAAGATAGAGCTGCCAGAATTCCTCCCAGAAGCAATGTACCAGAGAGTTCTAAAATTGCACCAGGGCATCATGTATCCTCACCAGTGCTGAGAGTTTTCCATTTCCTCTAATTTTTTGCAGATACTGCAGACAATAAATGAAATGTTATTTTAACTGTCCATTCCTTTTTGGAAGCAATTAAAGGATGTTCATATGATAACCATTTTTAAGTGTTTTTCCTTGATAGAGTAATGAGGATTCTTGCTGTCAACTAACACCAGAGGTCATGGTAGGGACATATGTTTATTTTAAAACCCTGGACTAGTGATCACAAAACATCCTTTATATTCCTGTATTTTTTTTTAAACTTTGATCAAGTTTCTTTTGGCTTCAGTTTTATCTAAAAATGGGGAAAAGTGAGAGGTTTTCTTTCTTTTTTTTTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACCCCCAATTCCCCTACCCACCCACTCCTACTTCTTGGCCCTGGCGTTCCCCTGTACTGATGCATATAAAGTTTGCACGACCAATGGGCCTCTCTTTCCACTGATGGCTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGGGGGTTACTAGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGTTGGGCCCTGGCATAGCCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGGGTTTGGAGGCTGATTATGGGATAGATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGGTTTGTTCCCAGTTCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATGTGTTTAGCAAATTGTATCTTATATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCATTTATCAGTGAGTTCATATTGTGTGAGTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTACCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAATACTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTTCGGGATCCTCCGGTAGTAAGAGGTTTTCTTTTGCAATTTGGGGAGACTTTGAGAATCCGTAAATATACATGTGACAGCACAGTTGGCATTTAGTATTACATTTGTGAACTTTGAAACAATGTACAGAGATGGCAGTTGTTCTTTTAGAATGTTCTTTTTTAGCCCCTTGGGGGCTGGTGAGATGGTTCAGTGGTTAAGAGCGCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCTCTCTTCTAGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATTAATTAATTAATTAATTAATAAGAAAGAATGTTCAACCCTTGTTGGCCTCTACTGCTGCTGATACTTTAGAGCTAAGAGAACATTATGGACATTCTAATCCCACAAGTGAAACAAAGCACGTGTCCTGCCTGTCTAGCACTCCGAATGCCATGGTGGAGCATTCTTACAGCCTGTGAGTAGCCCATGACTGATACACAGTGAAGAGAGAGTAAATGTATATAGAATAGATGGCTGCTGCGTGCTAGAGACTCACTGCTGATACCAGAGTGCTGTGCTTATGTGTATTACTCCTCCGCCTTGTCAGCACTCCCTGTTGTTACAGTCTTCCCTTTGGGCCTCTTGAGCCCTACTACATGTGAGTTCCACTTAGTTGAATGCCTCATGGACACCAGTGGTTTGTCAGGATGGGAAAGTCCAGCCAGGTTTGCTGAGAGTGACTTCTCCAGCGATAGGCGTTCCTTTTAACCTTGTTGCTGCTGTATCTGCTCAGGAAAGGGTCAGAATAGTTTGTGTGCTGAAAACCAGGTGCGTGGTCACACAGATGCCTTGCTCAGTCTCTTAGATTGGCCATGCTTTTTCCAGCCTGATTTCTTCTCCTTGAAGCTGTAGTCAAGGATATGGCTCCAGAGCTCCTGAGTGAGCACAGGTTTATGATGTAGTCTGCACACTAGCTAAAGCATGTGTGTAGAAAGGTAGCACCTGAGAGAGCAGTTCTGTCAGCTCACACCGGAAGTGCCACCCCTGCCCTCTGAAGACTCACAGCCACCCCCGGGGAACAAGTACTAGTGACCGTATTTTACAGCTGACAAATGCAGACACTTTAAGTACCTACCAAATACTGTATTGCCAACAAATGACAGAGGATTTAAAATTGTCTCATTTTAAAATTTGAGATGATATTATTGGTTTACCATTTGAAATTAATTATAAGCCAAGTTGAATTATAAGCGGAGTACTAGAAGCAATATGGTTAGAAACCCAGTTATCGAAACTTACTGAGGCCCTATGAGAATACAGATAGCTCATCAATGTTTGAATTTCTACTGACTCTTGTCCTGTCTTGGGCAG
Seq C2 exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTACGATGGGCCCACGCTCAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026889:ENSMUST00000028251:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types