HsaINT0138339 @ hg19
Intron Retention
Gene
ENSG00000119446 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:28413]
Coordinates
chr9:125009797-125014252:-
Coord C1 exon
chr9:125014126-125014252
Coord A exon
chr9:125009884-125014125
Coord C2 exon
chr9:125009797-125009883
Length
4242 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTTGTCCCTTTCCTGGACAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
ATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTAAAGCAGTTTGACTTCCTCTTCCACAAGTCAGGTGCTTTGGAGGGACAGCCTCGAGGCTACTGTTTTGTTAACTTTGAAACTAAGCAG
Seq A exon
GTAATTAAGCTTTCTCCCCATTTTATAATATTTATCAAGCTCTGTCATAATTATTTGTGCATGTCTCTTGCCTACTAGAATAGCAGTTCCCTGTAGGCAGGAGCCATGTCTGATTCATCTGTGTGCCTTACACTGAGTCCTATAAGGGATCCTCAATAAACAAATGAATTAGTGGCTTTCACAATTCACTGTCCCTTGGCCAAAGTTTAAGGCAACTGACTCACCTACATTTTTGACCAAATGCACTGGGATGCCCACATCGAGCACATGTACATCCCCCTCCCTATTCTCTTTTGTTTGTTGCTTTACTGGCTGGCCAACTGACAAAGCCTTCTTTTCTTTCAGTAGTTTTGTCCTGTGGTACAGAAACCTATCTGTGATGAGACACCCACAAAGACTCTTTTGTTATTTCTTCTCAAGGTCTCAGAACAAATGCATATAAATTTTAATGTATGTAGAAGAGCGCATTCACCTTCAACCATGATATATACATGGATCTCCTTGTATTAAAATTTAGTCCTTGAAGTGGAAGTGCATTGATAAAGAAATTGAATTTGATTGTTACTAAATGTAGAGATGCCGCATAGTACTTATAAATTTATTCATCATATGTAAGAACATTGCATAGTTAACGTTATATTAATAATTTAGGCCTGGCTCACACCTGTAATCACAACTACCCTGGAGGCTGAGATGGGGAGATTGTTTGAGACCAGCCTGGGCAACATAGTGAGACCCTGTCTCTAAAAAAAATTTTTTTAATTATGTGTGATGGTGCACCTATAGTCCTAGCTACTTGGGAGGCTGAGGCAAGAGGATCACTTGAGCCCAGGAATTCAAGGCTGCAGCAAGCTATGATCACACCACTATACTCCATCCAGCCTGGGCGACAAAGCAAGACTCCATCTCATAATAATAATAATAGTAATAATAATAATAATAATTTGTATGAGTGTTTTTTTATTATAAAATTAATGTGTGAATATTATAGATGAAAATATAGATAACTGAGAAAGAAAATGTAAATCACTTGGCCTAATACCCAGAAATAATCACTGTTAACACTTAGTCATATATCTTTCCAGTCTTTTTGTTTCTTCACATTCACACACACATAAACACGTTACACAGTGTTGTAACACACAAATGGAATCATATTATCATGTTTATCATTCAAAGTATACTAAAATTTTTCTACCATTTAATCACATCAGGGTGACATTCTGTATCTTGATATTGTGGTTTCACTGGTGTTTGTATGTACGTGTGTGGAGGGGAGTAAAATCATTAATCTGTATTTGAGATTTGGGCATTTTATTGTATGTGACTTAGACTGCATTTAAAAACTAATCATTTTTGATGACTACATAATGTGAATATATCATATTTGACTAGTCCCCAATTGTTAGCTATTTGGGTTGTTTCACTGGTATTTGGGTTGATTCACTAGTATAAATATCACAAGAGTGAGTATTTTTACAGCTCTAATTATGTATATCTGCCACATTTGGGGAGATGGAATGGCATCATCAAAGTCCATGCATAGTTTTTCTTAATAAAACTGCCAGATTGTCTTCAAGAAATGATATATCAGTATGTTCTGAGATTGTATGGTAGTGTCATTTCTCCTTGCCAGTGCTGGGTATTTTTTATTTCCTCTAATTTTTGTACATATGATAGCCAATAAATAATACATTGTTACTCTAATTGTTCAAGTATTTTGAGGGAAGTGAAATAATGCAATATAGAATATAGAATTAGCATTCTTTTTTTTTTTTAAATAAGGTCTTGCTCTGTTACCCAGGCTGGAGTGCAGTGACACAATCATGACCCACTGCACCCTTGACCTCTGGGTTCAAGTGATCCTCCCACCTCAGCCTCTGCAGTAGCTGGGACTACAGGCACATGCCAGCATGCCTGGCTAATTTTTGCATGTTTTGTAGAGATGGCATTTCACCATGTTGCCCAGGCTGGCCTCAAACTCCTGGGCTCAAGCCAACTGCCCTTCTCTGCCTCCCAGAGTGCTGGGATTCCAGGTGTGAGCCACCACACCTGGTCAGCATTTTTAAATATTTTATTCTTTCTTAATGATAAAATGAAGTGTGGTGAGAATTCTTTTTGTTGTTGTTTTTTTTTTTGAGACAGGGTCTCTCTTTGTCATCCAGGCCGGAGTATAGTGGCACGATCACAGCTTAGTGCAGCCTCAACTTCCTGGATTCAAGCAGTTCTCCCACCTCAGCCTCCCAAGTAGTTGGGACCACAGGCACACACCACTACCCCAGCTAATTTTTGTATTTTTTGTAGAAGCGGGGGTTCGCCATGTTGTCAGGCTGATCAAACTCCTGGGCTCAAGCAACCAGCCTGCTTCGGCCTCCCAAAGTGCTGAAATTACAGGCGTGAGCCACCATGCCCGGCCTGGGAATTGTTGCAGACAACTAAAATCAGTGATCATGTTGGGCATAGATGTTGGTTTAAAAACACTGGGTTAGGATACAAAGCCTAGTTTATATTTCTGGCTCTTTTATTTATTAACTTTGAGCAAGTCTCCTAACTTCTTTTGGCCTCAATTTTCCATCTAAGAATGGAGATTAAAAATACATATCCTTCTTACCTTATGGGAAGTTGGGAGAATAGATGAAAGTATAAAAAAAAAGTAGACATTTAATAATATTTTTAAATATATGAACTTTGAAATAATTTGTACAGGTAGGAAATTATTTTAAAAAAAACATTTAAAAATAAGATGCCCCTGCTGGCAGCTTATTACTGCTCCTACTTTGGAACTAATAGAGTGCTCTATGAGTTCTCATTCACCAAATGAAGCTTAAAGGAATAAAATATTTCTTACCTGTCACTCTAGCTTTGTGTGCTGTAGTGGGGCAAGGATGATTAGTGAATATCCAATGCCTACTACACAGTGAGAACTCAGTAAATATTTGTTAAATGTCATACTGGTAGGTTCTGGAGGAACAAGAGAATCACCAGTAAAACCAGACTGGAATGCCAACTGGCTTCTATAGCCTCTCCCGCTCCCTGGGACATCCTGTTCCTCCTCTGTTCCTTAAGGGCTTCTTCACCCTCACTAAACATGGGTTACACTTGGCTGAATGCCTCATGGATGCAAATGGGGCAAAGAAGGTTTGGCAGGATGGAAAGTACAGCCAGGTTTCCTGGGAATGACCTAGAGTGACTGTTAGCCAGCTTCAGGAATTCCTTTCAACCGTATTACTCCTCTGTCTGATGGGGAAAGGGTCAAGGAACTTTCGGCTCTGAAAACCAGGTGCATAGATTGACTCACACAGATACCTTGCTAACGGTCTCTTTGACTCACTCCTGCTTTTTCCGGCCTAGTTTCCTTGACTCCCATGCCCTTTAAAGCAATTATTCCTCACTATGAATCCAGGGAGTATGCCCTAGTCCAGGATATGGTTCCAGGGCCCTTGCGGGGAGTACAGTTTCTTGACATAGGAGGTGCTACCCTACCTAACGGAAGTGCATATATGTCTATCACCTAATAGGAACAGCACTATTACTAACATATGTTAAGTGCATATCATATACTTCATGCTTTACATTCTTTGAGTCCTCACAACCACTGAGGAATAAGTATCCATATTATCTATTAAAGATTATACATTATTTATCTGTATTTTACAGTTGACAAAGCTAGAGACACTTAAGTGACCTGCCAAATAGCATACTGCCAGCAAATGGCAGACCAGGATTTGAATTTTTGTCTGACTTTAAAAAATTCACGCCCTTAGCCAGGCGCAGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGGGGCGGATCATTAAGTTGGGAGATTGAGACAGTCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAAATTAGCCAGGCGTGGTGGTTCATGCCTGTAGTCCCAGCTATTCGGGAGGCTGAGGCAGGGGAAGCGCTTGAACCTGGGAGGCGGAGATTGCAGTGAGCCGGTATTGCACCACTGCACTCCAGAGCCTGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAACAACAAAAAAACCATGCCCTTTTTAAAATTCTGCCTTGTAAAATTGTAAACCCTTGCCAGTTATTTACCAAAAACAATTTGTTAGAAACTCAGCCATCAAAGCTAGTGAAGCCCTGTGAGAATACATATAGCTAGTTAAGCATTTCAGTTTTTAACTAACATTTGTCCCTTTCCTGGACAG
Seq C2 exon
GAAGCAGAGCAAGCCATCCAGTGTCTCAATGGCAAGTTGGCCCTGTCCAAGAAGCTGGTGGTGCGATGGGCACATGCTCAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119446-RBM18:NM_033117:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(25.7=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)