BtaINT0123571 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94043392-94052654:-
Coord C1 exon
chr11:94052421-94052654
Coord A exon
chr11:94043568-94052420
Coord C2 exon
chr11:94043392-94043567
Length
8853 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTCATGTTCTTTTCTTATAGCTA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GTGTAGCTAGTTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTAGTGACACTTGTAAACTGTCAGCTGGTGGAGGAAGAAGGTCGTGTAAGAGCCATACGCGCAGCCCGTTCACTTGGAGAAAGGACTGTAACGGAGCTAATATTACAGCACCAGAACCCTCAGCAGTTGTCTGCCAACCTATGGGCTGCTGTCAGGGCTCGAGGATGCCAGTTTCTAGGGCCAG
Seq A exon
GTAAGATAGATCACTGTCTTATTGGCTATCAGGGCTAGAGGGTGCCAGTTTCTAGGAATAGGTGAGAATGCTCTGATTTATGGATACAAATTTTAACATAATGAAAGATAAACTTTTTTTTTTTTTTTTATAATAACCACCCTACCTTGGGGTGCTTGACATGTTTGTTTTCGCTGCACTGGCTCTTGATTGCAGCAAATAGGCTTTCTCTAGTTGTAGCATACAGGCTTTTCTTGTGCAGCATGGGCTTAAGTTGCCCCACAGCATGTGGGATCTTAGTCCCTTGTCAGGGATCGAACCCATGTCCCCTGCACTGGAAAGTGGATTCTTAACCACTGGACTACCAGGAAAGTCCCAACTAGTTTTTATTGATCATAACTTATATGATGAACAGGGCTATAGTATCTTTGAATAAATTTCTTATTTAATTCTCAACAGTCTTTAAGTGACACAGACCCAACTTTACAAATCAGAAAACTGAATTAGAGAGAGGCCTAATATTGCACACGTAGTAAGTAAAGGAAAAATAAACTTTCTTTTTATGAAGAAAATTAGAAGTTCATGATTGTCTTTAAAATTGGGAAACAGAAAAATGATTAGAAAAAATGAGAATCACCAGAGTTTTTGTAGTTACCATCAACTGCATTCTTTTTTTAAAAAATCTTTACCTATACCAAGGTTATGAGGTACTTTTCTGTGATATCGTATTGTTTTACCTTTCTGATTTAGAACTATATAGGCTATGAAGAATTTATTTGTGTGGATGAAACTTTTTAAATGGCATTGGGACTACTGGATAGACATGTGGAAAAACATAAAATTGGATGTATTTCTTTTTTTTTTTTTTGCATGAATGTATTTCTTATATTCCTTAGCTATATAAATTTTAAATAGGTTAGAAATACTAATGATTAAAAAATAAATTATAAGTAATAAAAACTTAAAACTCAGTATTCACAAAACTAAGATCTTGGCATCTAGCTACATCACTTCATGATAGATCGATGGGGAAAAAAATGGAAACAGTGACAGACTTTATTTTCTTGGGCTCCAAAATCACTGTGGATGGTGACTGCAGCCATGAAATTAAAAGATGCTTGTTCCTTGTAAAAAAAGCTTTGACAAACCTAGACAGTGTATTGAAAAGCAGAGACATCACTTAGCCGACAAAGGTCCATATAGTCAAAGCTCTGGTTTTTCCAGTAGTCACGTATGGATGACTGTGAGAGTTGGACCATGGCTGTGCATAAAAATTGATGCCTTCAAACCATGGTGCTGAGAAAGACTCTTGAGAGTCCCTTCGACAGCAGGGAGATCAAACTAGTTAATCCTAAAGGAGATCAACCCTGAATTGGAAGGACTGATGCTGAAACTGAAACTTCAATACTTTGGCCACCTGATGAGAAAAGCCAACTCAGTGGAAAAGACCCTGAACTGGGAAAGATTGAGGGCAGGAGGAGAATGGGATGACAGAGGATGAGATGGTTGGATGGCATCACCAATTCAGTGGACATGAGTTTGAACAAACTCTGGGAGATAGTGAAGGACAGGGAATCCTGATATGCTGCAGTCTGTGGGGTTAAAAAGAGTCAGGTGTAACTGAGTGACTCGACAACAACAAAAGTGAACATAAGAGTGAATTTCTTTATAACCTAGAAGTAGGAAACACTCTTTTCTTTGGCTCCAAATCCAGAAGCAATTAGAGAAAAGATTGATATTTGACTATATAATTTTTAAAAATTATATCATAATAAAGCCTCATAAGAAAAGTAAGATGAAAGATGATGCTATGAAACTGCTACACTGAATATGCCAGCAAATTTGGAAAATTTAGCAGTGGCCACAGGACTGGAAAATGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACCGCACAATTGCACTCATCTCACATGCTAGTAAAGTAATGCTCAAAATCCTCCAAGCCAGACTGCAGCAGTACGTGAACTGCGAACTTCCAGATATTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAAGTTATATGCAGGTCAAGAAGCAACAGTTAGAACTGGAACAGTTAGAACTGAACATGGAGCAACAGACTTGTTCCAAATAGGAAAATGAGTACATCAAGGCTGTATATTGTCACCCTGCTTATTTAGCTTCTATGCAGAGTACATCATGAGAAACACTGGGCTGGAAGAAACACAAGCTGGAATCAAGATTGCCGGGAGAAACATCAGTAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAAGAAGAACTCAAAAGCCTCTTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGGTCAACATTCAGAAAACTAAGATCATGGCATCCGGTCCCATCACTTCATAGGAAATAGATGGGGAAACAGGGGAAACAGTGTCAGACTTTATATTGGGGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAAAGACATTACTTTACCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCACTGGTCATGTATGGATGTGAGATACATGTGAAGAAAGCTGAGCGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTAGAGAAGAGTCTTGAGAGTCCCTTGGACTACAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCATCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCTAGTACTCTGGCCACCTCATGCGCAGAGTTGACTCATTGGAAAAGATTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTTTGAGTGAACTCTGGGAGTTAGTGATGGACAGGGAGGCCTGGCATGCTGTGATTCATGGGGTCGCAAAGAGTTGGATACGACTGAGCGACTGAACTGAACTGAACTGAAGAAAATTAAAAAAAAAAAGAAACTTGGGGAAATATTTATATAATATCACGTACAAGGGGCTTATATAACTAATATATAATTGTGTTGTACGTAGTTGCTCAGTCATGTCTGACTCTGCAACACCATGAATTGTAGCCCGCCAGGTTCCTCTGTCCATGAGGAGGATTCTCCAGGCAAGAATATTGGAGTGGGCATGGGTTGCCATGCCCTCCTACAGGGGATCTTCCTTATCCAGGGATTGATCCCAGGTCTCCTGCATTGCAGGCAGATTCTTTACTGTCTGAGCCACCAGGAAAGCCCAATATATTTACTTGTAAAAAAACTCAGAAGAAATATACCAGCCACCCAATTAAAAAATTGACCAAAAATGCAGACAATTCAAGGGAAAAAGTAATGTAAATGGCCCTCAAACATATAAAAAGATACTCAGTATTTCTCATATTAAGAGAAATATACATTAAAATTACACTGAAATACCATTTCTCACCTGTCAGATTGGCCAGATTCAAAAGTCTGACAACTTTGTTGTCAAGCCTGTGGGAAAACAGGTACTTTCATCCAGTAATAGTGGGAATGCAAAGTGGGGCAAAGTATAGAGAGAGGAATTTGTCAGTATGTAGCAAAATCATCTGCACATCTACTCTTTGGCCCAGCAGTCCTTTTTCTAGCAATCTGTCGTATAAATATGGTGAAAAATATAGAATGCATAAATTTAATAAAGCACTATTTATAATAGCAGACATCTAGAATGAACTTGAAAGTCTGAATAGGAGACTGGCTTAGTAAACTGCTATCTATCTTTCCAGTGGATTGCCCTGCAACTGTTGAAAGGAATGAGGAAAATGTGTATAGTCTGCTGCCTATGATAATGTAATATACATTACGATAGAAAATAAGCAAGGTGCAGAATAATATGCTTATTGTAGGAAAGCAAATTTTTATCTCGAAAAGGAAGAAACAACCATTTTCAAATTATTTGTTTATATTTTTCAAAAGAACATTGGTAGGAAAAGTTACAACATAATAAACATGTAGTTAGGAAGAACAGAGGGAAACCAGACAGGACCAGAAGCTAGACCTCTCTCAGTGTACCTTGATTTGTACTTTGAACCTGTGTAAAGGTTTTATGTAATTTTAAAACAATTTTTAGTAAATATGAGTTTTAGAAATTTAAATAAAATGAATAGAACAAAAAAATGCCTAAAAACAAAAAGCTAAACATTATTTTGGCAGCATATTCATCAGGAATGAATTAATTCAGGTGACTTTAGAACACAGTGTTTTGATTTTTATATTCCTGGTGTGATATATAATAGATTATATTCACTAGTCTTACTGATATTGTTATTTTGAAATGAATTAGGATACAGCAAGTAAGTAGTTATATTAATGCCATCGGAAACAAAAATTTTTGACATTTAAAAAGAGATATAAGTATGAAATCAAAGAATTTATGTAAAAAGCCTGCATCCTTAAATTTTAATTGGCAAATAAGTACAGACTCATTTAATTTTCTTTTTCTAGAAAATAAGTATTTCCTAACTGTCCACTGTAAAGGCTTGAAAGGAATGAATAGCCATAGCACCCAGATAACATTTCATACTAAAAAGAAGTAGGGCTCTTTGAATAAATGTCTTATGCCAGTTCTAGGATAGAAAAAGTACAAGATGAGCCTGGGAAGTCTTGTGCTAGAAAGTAAAAAAGCTTTTAAAGACCGTCGGAATCTTGTCAAAAGGACACAGAATTTGAAAAGGCTCCCACTGGATAAAAGTGGGACAATTTGAACTTCCAAATGAATAATGACTATAATGAATTAAAAAACATAAAATGTGTAAAAATCCGTGATCCTGTAATGTTAGTACAGAAAAAATTAATTGGTTATCTTTGTCAGTTACTACAACACCAACACATTATGCTAAAAATTGGAAAAGGAATAGAAAAAAATCAAGCATGCTTTTTCTGCCTTTTTAAGTTACTTTCAAGGACAGTTTCTCAGAATTTTGAGGGTAAGTTTTTCCTTTAGCAGAGTTCTAGCTAATAAATATAGGAAAAAAAATGTTAAAGTTAGAAAAATCACATCAGGTGAATTAATGGGTCTAGGTAAGAATTATTATTGGCTGTTAAAACCAATAGATGAAAGGTTGAAAGTGAAAGTGAAGTCGCTCAGTTGTGTCTGACTCTTTGTGACCCCGTGGACTGTAGGCCACCAGGCTCCTGCATCCATGTTATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCGAACACGGGTCTCCTGCATTGCAGGCAGACGCTTTAACCTCTGCGACACCAGGGAAGCCCAGATGAAAGGTTAGTAAATGCAAAAGGCCTGAACCCACTGATGAATCTTGATATTACTAAAAGTGAGACATCTAGGTCTTATATACCTATGTGATATACAAAATAAGAAGTATGCTTGCCCTGCCCAAAACCCCCAAAAGCTAAAATCTTATTTCAAATCTAATCAAGTCTCTAGTTTACATGAAATAAGGAGGATAAAGGCATACCATAAAAAAAAGTGCAAAATTAGCGAAATTGAGAATGTGGGATATTGTTTAGAAAAATGATTGTTTCTGCAACCAGTTATTTTGTTCTAATTGGGAGGGTGGGAGAGTGGTGAGAAACTAGTATAGATTTTTCTTGTTAAGCGTGAAGACATACAAATCAAAAGCTACATATGGACTTTGGCTGCTTACTCAAAGAAACCAACTGTAAGAGGAAATTTTGAGACAGTGGGAGAAAATTCAGCATGGATTGGATATTAGATGATATCAAGGAAATATATTTCTTTTTTTAGACATGGTAATAGTGTTATGTTAATTTTTTAAGTGCTTACCTGTTAGAAATACATAATGAATTATTTAAGGATAAAGTGCTATGTTATCTTGGATTTACTTCAAACCACTCCAGCTAGAACAAACTAGAGAAGTGGATAAAGAGTAGATGAACCCTTACTGGCAGGAGCTGTATTAGGAATGCATGTTATTTCTACTTTTGTATATGTTTTATTTTACATAATACAAAGTTAAATTGAAAAATAATTTTGAAAATCCATAGAAAGTGAAAGTGAAGTCGCTTAGTTGTGTCTGACTCTTTGCAACCCCATGGACTGTAACCTGCCATGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCAGAGAATCTTCCATATTTATATATAATTTGAGAATGCCGCCTGTGGATATTTCCTCATGTTTATTTACCTTATCTAAGAAGCACTAGGTGGTGTGTTGGTTTAGTCGCTAAATTGTCTCTGACTCTTGTGACCTCGTGGACTATAGCCAACTAGCCTCCTCTGTCCATGGGATTCTCCAGGAAGAATATGGAGTGGGTTGCCATTTCCTTCTCCAAATCTTCCTGACCCAGGGACCTGCATCCCCTGCATTGCAGGCAGATTCTTAACAGTGAGCCACCATGGAAGCCTAAGAAGCACTAGACTAGTTATCAAATATCCTGTGTTCTGAAACTCAATGACAAAAAGATAATAAATAGCACAGTTTAAAAATGGTCAAGGGCTTAAATAAATATTTCTACATAGAAGATACATAGATGGTGAAAAAGTCCATGAAAAGATGCTTAGTGTCATTAGTCATTAAAGAAATGCAAATCAGAATCACAGTGAGATACCATTTCATATCCACTAGGTTGTCTGTAATTTAAAAAGTGGAAAATAAAAGTGTTAATCGAGGATGTTAGGGAGCCCCTGTGGAAAAACAGTTTGGTGGTTCCACAGAAAGTTAAATGTAGAATTACCTTATGATCCAGCATTTCCACTCTTAGGTGTATACCCAAAGGAACTGAAAACAGGTATTCAAACTAGTATTTGTGCATGAATATTTATAGCAGTGTTACTCACAATAATCAAAAGATGGAAGCAATCCCATCAGTTTTTATGAATGGATAACCAATATGTGGTATATTTATAAATACTGTATTATTTAGCCATAGAAAGGATTGAAATACCAATACATACCACAATGTGGATGAACTTTGAAAATGTTATTTTAAGTGAAGGAAGTCAGGGAATAGGTCACATATTCTGCATACACAAATGTCAGTCCATAGAACCAGACATCAGGCTAGTAGTTGCTGGAGGCTGCAGGGGTCAGTGGTATGAGGAGTGACTGCTTAATGGTTATTGAGTTCCTGTCAGATAATGAAGATGTCTCTAGAACTAGATAGAGTTGATGGTTTTATACCATTGTGAATTGTTTACTTTAAAATGGTTAATTTTATGTTATATGAATTTTACCTCAATTTTTAAAAAGTCCTTGTTTCTAGTTATTATTTTGTTGCTTACTGATTGTGAAACTTGGCCTAGTCACTTAACTTTTCTGAGTCTTGATGTCCCACTTTGAAAAAGAAGGGATTTGATTTTTAATCTAGATTCTAGATGATCTTTCAGTTCCATTGTTTTCATTGAGAACCAGTATATTTTTACCAAAAAGTTACTAGAATAATGTAGAGAATTCCTTTGTACTCTTTATCCATATTCACTCATTTGTAATATTTTGCTATATTTGTTATATAGTTCACTTTCTCATCTTTTTGAACCATTTAAGAGTAGGTTGCCTATTTCATGCCTCCTTTACTGCTTACACTTAAGTCTTTTTTTAATTAAAAAGAATACATTCATCAAATTCAGAAAATTTAAATTTGTTAAAACTTATATTCCAGTTTTGTTGGTTATTCCAGAAATATCTTTTATGGCATTAATTTTTTTCATTTTATGATTGAGTCTAAGATGATGTCATGTATTTATTTGTCACAGCTGTTATGTGACATGCAGGGTCTTTATTCCTCTATCAGGGATTGAACCCATACCCTCTTCCGTGGAAACACAGAGTCTTAACTATTGGACTGCCAGGGAAGACACTGTCATACCTCTTTTTAGTCTTCTTTAACATAGTACCATTCTTCAGTCTTTCTTTGTCTAATGTTGCTATTCTTGAAGAATACAGGCAGTTATTTTATAGAATGTTCTTAATTTGGGGTTTTTTGATATCCCCTTATGATTAGATTCAGATTATACTTTTACCTCCCTGACTGGAAAGCAACACAAATTGATGCCTTTAGGTATTGCATCCAGTGGCTAATACTACTTTTAAATTATATACAAAATAATTCTGACAGGCAAAGCAACAGTCTCAAGCATAAAAAAATTACCATTTATTTTAAGACTACTGTGTGTCCTTCACATGTTATTTGTCAGAGTAGCTCTGTGAGTTTTATAAACAAGGGCCTTTTTCACTTCAACATTATGATTATCTAGTTGACTATTACAAAGCTATAGAGGATATATTTTGTTTAAAATCTGTTTACTTGTATTTTGATTGGTTGTTCAGTAGGACACGTCTTTTGCTTGATTACTTTCTAAGTAAACTATATTTATGTATGTATGATGTTCTCTTTTTGTGCTAAGTATTTGAGTACTAGAGATAATGAACCACTATAAACTAATATCCAAAGAAGACTGACAGATGTGATCTGCAGGGCTCCTCATTTATCATGAACTCATGTTCTTTTCTTATAG
Seq C2 exon
CTATGCAGGAAGAAGCTTTGAAGTTGGTGTTACTGGCATTAGAAGATGGTTCTGCTCTCTCAAGGAAAGTTCTGGTACTTTTTGTTGTGCAAAGACTAGAACCAAGATTTCCTCAGGCATCAAAAACAAGTATTGGTCATGTTGTGCAACTACTGTATCGAGCTTCTTGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867:ENSBTAT00000032789:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development