GgaINT0125465 @ galGal4
Intron Retention
Gene
ENSGALG00000001253 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr17:8795780-8796774:-
Coord C1 exon
chr17:8796541-8796774
Coord A exon
chr17:8795956-8796540
Coord C2 exon
chr17:8795780-8795955
Length
585 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CTTATTTTTGTGTGCTGAAGCTA
3' ss Score
4.43
Exon sequences
Seq C1 exon
GTGTTGCTAGCTTGAATCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAGCTTGTGACACTGGTGAATTGTCAGCTGGTAGAGGAAGAGGGTCGAGTTAGAGCTATGAGAGCAGCTCGATCACTGGGCGAGAGAACTGTTACAGAATTGATCTTGCAGCACCAAAATCCTCAGCAGCTTTCTGCCAATCTTTGGGCTGCTGTCAGGGCACGAGGATGTCAGTTTCTAGGGCCAG
Seq A exon
GTACGGTATCTGCAGAGTCTGCAACATATAAATATGTACTTTTTCTTAACATGTGCAAAAAAAATCTTGGAAGCTTTTTCTGTGCAGTTGAAAGTGCCATGACTTCCATTTTTCAACTTTATGTAAGAAAGAGAGGGAGGGAAAGAAAGACTACATGTTAGTAAAATCTGCTTTCTAAGAAGGTTGGGGTTTGTTGTTTTTTGTTTTGTCTTTATTGACTGTTCATTGAAATTATGAGGAATTGATTGAAAACAGCTGGCGAAGAAACATGAATAAATCCACTTTCTTTATAGCCTGATACACAGTGTGACTGTAATACAGGCTGGTTGTACCGCTGCCTCTGATCAGATTTTGATGCTGAAGTGCCAATTGCTCTTGTTTATACTTGAGCTGTGAATAGATACTCCTTCTGAACTAGCAAATTTCTTAAAATATGTTCACAACGTTTTTTTTTATTAGCGAAGTAAAAATAAGGAGTTGTGTTCAGGATGATTCATACATTTCTGCATATGGTGTTAATACATGGTAGCCATGCTGTTTTCTGGCAACATGTTTCTATTCCATTCTTATTTTTGTGTGCTGAAG
Seq C2 exon
CTATGCAAGAGGAGGCACTGAAACTTGTATTACTGGCACTGGAAGATGGCTCCGCACTCTCAAGAAAAGTTCTGGTACTTTTTGTGGTGCAAAGGCTAGAACCAAGATTTCCTCAGGCCTCTAAAACAAGCATTGGTCATGTTGTGCAGCTACTGTATAGAGCATCATGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253:ENSGALT00000001902:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGTCCAATGCAAAGGAA
R:
GCTGCACAACATGACCAATGC
Band lengths:
356-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]