BtaINT0124426 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019630 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:HGNC:30281]
Coordinates
chr16:66422375-66427348:+
Coord C1 exon
chr16:66422375-66422464
Coord A exon
chr16:66422465-66427161
Coord C2 exon
chr16:66427162-66427348
Length
4697 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGGCATTATGCTTTCTGCAGACT
3' ss Score
7.26
Exon sequences
Seq C1 exon
CTACGCCCTCTCCTGTGAGATCGAAGCGGCTGCTGATGCCAGCGCCACATCGCCCAAGCCTCGGAAGAGCATGGTGAAGAGGCTCAGCCT
Seq A exon
GTGAGTGCCACCCTGGGGTCCTGGGGCCCAAGAGGGTCCCATCAGAGTGGGAGAGGGGGAGGGTATTCAACAAAGTTCCCCTGAGCCCATTCACTCATTTGTTAAATCGTTAACCTGTCCGTCCCGACTTCAGTACATTTCCTAGATCCATTCTTCCCCACTGTTCTCTCTGACCTGGACCACCATCATCCCCTGCCTGGACCACACTCCTGCAAGATCCTTACTGACTTCTGGCCCCACCCTTGCTCCAACAGTTCTATTTTCCACCCAGGAGTCTGGCAGTGTGTTCAAATGTATCCCGGATTGTATCACTTCCTTGCTGTAAAATGTCGACTGGTCTTGTTTTAAGGTAGCACCCGAATTCCTTATCCTGTTTCACTAGGCCCAGCGTGATCTTCCCCAGTCTTCTTGCCACCTTTCTCTGTCTGGAATCCCCCTTGTTCACCACGATCCAGCCCTGCTCATCCCCCAGCCCTCATTTAACCTCCCCAGGCTCCGTGCACACTAGACGCACCAGGTATTTGCACTAGATGTCCCCGTGACCTGACACACGTTCTCTCCAGACTCGCTCCTTCAGATGTTGGCACAAGCATTACCTCCTTAGAGAGCATCTTGTCTAATGTTGCCATCTGCCCTGATCACTCCCAGCCATGCCCGTTGTCTCCTCCAGTGGAATGTAAGCCACTGAGAGCAGGAACCTTATCCGTTGTGTTCATGGCTGTTTGTCCAGCTCAGGGCCAGGTGTAGCTAACTTAACAACACCTGTCTCCCTCTCATCACAATCCAAAGTCTTCACAGTGGCTCTCAAGCCCCTTCAGGACCTAAAGTGTCATCCCAACCCTGTCCACGTGTCTTGCCCCTGCCTGTCCTCACCTTCCCCCTCTCTGTGCACTGCAGCCCCCCTGCCCCCAGGCTGCCCTGAGCTCACTAAGCACACTCATTTTCATTTGCTGTTTCTTCTGCTTAGAACACTGTTCCCCAGATAGCCAAATGGCTCAGTCCCTCACTTACTCCACATCTTTGTTGAAATGAGCCTTCCCTAACCACTTTATATAAAACTGTAACCTGTCCATGTTACCTGCCCTTGGCACCTTCTCTCACCCTCACCCACTTTGAATTTCTCCACTGCATTTACCTCCAGTTGACATGCCGTATTTGGATGTATCTGTTTATTAAATGGAAGGCAAACTCTGACGGCAGAAGTTTATATCTGTTTTTGGTTCATTGTTAACCTCGGAAATTGGTGTCCCATACATAGTAGGTGAACAATACATATTTATTGAATGAACAGATTGAGTCATGTGCCAACACTGTTATGAGAACAGTGTATGTATTTCTCATCTGATGCATAAAATAACCTACTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCAACTCCATAGACGGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCCCCAGGCAAGAACATTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTCAAAGTGAAGTTGCTCAGTCGTGCCCAACTGTTAGCGGCCTCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGAAAATAACCTACTAGGTTCTACTATTATGCCAGTTTCTTTTTGGCGGTGCCACGAAGCATGTAGAATTTTAGTTCCCTAACCAGGGATGGAACCTGCACCCACTGCATTGGGAGCATGGCGTCTTAACCACTGGACTGCCAGGGAAGTCCTGATAACCAGTTTTATAAACTGGGAAAATAAGGCACAGACAGGGTGAATAGTATGCCAATTATTGTCGGATCTGGGCTCAAATCCAAGATTTGACTCTAGAGCCAGGGGATCCTTTAACTGTCTGTCTAGTGGAGAAATACCTTCTGGGGGAAGAGGAGAAGGACATAGGAAATAGGAAGTAAGAAGTGGAGGAGAGGAGAAGATGAGGGAAGGAAAGAAGAAAAGGAGGAAAGAGTGAGGGGGAAGGAAGGGAAGGAAGAGAGCCATCAGTATAATAAGACCCTGTGCTTTGAATGTGGCAAATTTTATGGAAGAGTCTTAAGAGAACCTAGTCTGTCTTGAAGTTGAGCCCATAGACATTAAACTCTGATAGACCTTAGACTAGTGAATCTAATGACGGCTAGGGAGACAAGTTCAAGGAAGCAAGGATTATCATTTGATTAACACATTTGTTCTTCCCTTCTGAAGGTGTATACCTGTGTCTGGTCCTTTCACTGACACAGTCTGCGTTGGCCAGGAGTTTCGCGCTTCCCCCCACAAAGCCCCACTAGTGCTTGGAGGTCCAAGAAAGGAAGCGACATGAAAAATGGGTCAAGAGATGGTGGGATGGAGTTGAGACAGAGCAAAGATACGCTTTTTAGGTCTTGGAATTTAAGCTTCTAATTCCTTAAATTATTTAATAAAAAAATCAAGCCTATCCTCATTGTTTCTACTCTTGTTATTTTCCATAGAATATGTTAGTCGCTCAGTAGTGTCCAACTCTTTGTGACCGCATGGACTGTAGCCCAACAGGCTCCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTAGCCATTCCCTTCTCCAGGAGACCTTCCTGACATAGTCAGTGCTTATTTGGGTTTGGACCCATTTGCTCGTTTCTTTACATGCCATTCCTTCTTGCATCTTATGCCTTCCTTCCTGTTGTTGATTAATGGTAAATAGTCATTGTCTGAAAAAGTCTTTGTTTTGCCCTCACTCTTGGAGTCATATGGTTTAGAATTTCAAGCTATTATTCCATATCTTCTGACCTCTGTTGTTGCTCTTGAGATGTCTGGTGTGTGTTTAATTTTTGTTTTTGTGTATTATGCCCCGTGCCCTGTTGCTTTTAAGAATCTCTTTTGTCTTTAATACACCGCTGTGCAGGTTAAGGGAGGATTTCGTCTTACTGATCCTATTCAGGTTGTTCTTCCTGGATCTGAGGATTCCTGTGGTCCATTAGTTCTGGAATCTCTTCAGACCCTTCAGATACGGTGTCTTTTCCATTCCATCATTTGTCTTCTTCTGGGACTCTCCTTACAGACATTGCAGGCATTCCTTCCATTCTCTGTGTCTTTTAACCGCTTTTGTTATTCATGTCTTTGTATTTTGATGCTGATCTCTGAGGATTTTCTTCAGACCTGTCATCTAGTTGGCAGTTTTTCTTTTCAGTGTTTGGTTAATCCTTCCACTGAGTTTTTAGATTTAAATCACTACCTTTTTGTCAGAGTGCCTTGCTCTTAACCACTGTTTCAGCTTCTTCTCATATGTTTTTGATGTTTTTCAATGTATTTGTTTTATAGCTTGACTCGTGGTAGACACTCAAATGATTGAATGAATGAATTATTAGTTTGTTTCTGACGGTTTTTATCATCTAAAGTTCTCAGGAGTCTAGACTTGCTGTTTTGGGACTTCCCTGGTGGTTCAGTGCTTAAGACTTCACCTTCCAATGCATGGGGTGTGGGTTTGATCCCTGGTCAAGGAGCTAGGATCCCACATGCCTCGAGACCAAAAAAAAAAGATCGTCTAGACTTCCTGTTTGTTATGCTTCTCTCTTTGGATAGGTTATTTTCTTGTGTGTATATTGTGAGTTCATCTTTATCAGGGAATTCTCTGAAACCTAAGTTGAAGATATATTCCTTCAGAAAGGTGTGTTTTTTTTGTTTTTTTTTTTTTTAAATGCTAGTTTCTTCAGAAGGATCACTGGCTGGAGAGTTCCTAGTTCTTAGATTAGCTAAGTAGCAAATCTGAATGAGGTGCTGGCTAAAATCACATATGATTTAGGGGAGAGATTTTTCTCCTACCTAAGCTCAGGCCAACAGATAAATTTTCCTGGGTAGGAAGATTTTTTTTTTTAGCCCATCTTTTTACTAAGGGTATAGATAGCCCATTGAGGATCCTGGCTCTGTATAAAGGATGTCAGTACTAACTCTCTACCTTACATAAACAGAAGCCCTCATCTTTGGACCCTGTGTATGTGTCAGAACCCATGTGCGGAGTTTGCCAAGGTTGGCACCTCCCACTCCCCATCCAGAGCAGCTGCAGAGTTAGCTTGCATATTCTGGTTTTCAGTTCCCTTTTTGTTTCTAGCCTGCAGGGATTTTCCTTACTGTCTTGTAAGCCCAACTTTGAGAAGAATTTGTAATGCTTCTCATCTAGTTGTTTAATGATGAAGGGGTTTAGGTTATTGTAGTTCATGGGATTGTTGGAGAAGAAATCTTCCTGCTTGGTTTCTTGTCCAGCACAGGGCCAGCCTTCTTTTTTAGCCTCTTGGACTTCATTTTATGGTGGGAAGTGATAGGAGTATGGCCACAGTACTTTGATCCTGCCAAAGTGGTCCAGGAACTCTCAAAAAATGGAGAACCATTGACCCAGGAAGACCTCAGATTAATAAGGTCCTTCCTCCAGCTAGGCAATGTGTCTCCTTTGAGGTTAGAAATAACCTATTGGGACAAGATGTTTACTGCAATCTATTAGAAACTGGGTAAAAAATCTTTTCCTAATAATGACAGGGCACACAAAACTGAGAAGACATCAAGGACTTATTAACACAAAATACTTGCTTAATCATGGATTCCAGATTTTTACGAGCCTGAACGCCTGGCATTATGCTTTCTGCAG
Seq C2 exon
ACTGTTTCTGGGGTCGGACATTGTCACCAGTAGCGCCCCCACCAAAGAGCAGCCCAAGTCCGCTACCAGCGGGAGCTCTGGTGAGAGCATGGACTCCGTCAGCGTGTCATCCTGCGAGTCCAACCACTCAGAGGTGGAGGAAGGCTCCATCACTCCAATGGACACACCCGACGAGCCTCAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019630:ENSBTAT00000026153:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development