GgaINT0035663 @ galGal3
Intron Retention
Gene
ENSGALG00000004728 | Q5ZIY0_CHICK
Description
NA
Coordinates
chr8:8040589-8042891:+
Coord C1 exon
chr8:8040589-8040678
Coord A exon
chr8:8040679-8042704
Coord C2 exon
chr8:8042705-8042891
Length
2026 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGCTTTGTTTTCTATACTAGACT
3' ss Score
8.01
Exon sequences
Seq C1 exon
CTACAGCCTCTCCTGTGAGATTGAAGCAGCTGTTGACACGAACACCACGTCACCAAAACCTCGGAAAAGCATGGTGAAGAGGCTCAGCCT
Seq A exon
GTGAGTATGACCGGGATATAGCAGCGTTGTGTGTGCTGGTATGAACCAGAACGAATGCAACAAACAGAGCTCATTTCACCAGCTGAAAACTTGGCTGGGAACCCAGAGCACCACATTACTTCTAGGAGACACCGTCGGCCAGAAACTCTTAATTCTGTCTGAAGCTGTCTTCTTCTATTGTTATAACTGATGGTGAGGATTATTAATGATGAAAGAGATTAGAGACAAACAAACCTTTTTAAGAGTCAGGAAAAGGAACGATTTTAGCATTGGGTTATAAATTCAGTACCTATTGTGCAATAGCTTCCCTGCACGCAGTAGCAAAACAGAGTAAATGAGGATAAAGTCTGGCCTGTCATTAGTCTAATTTACTATCCACATGCAAAAATTCCTTGCAGGATTTTACTACGATGATTAAGGTTGGCAAAAAGGCATAGAAAACAGAAACAATCTGCCTAACTGCCTTCAGGTTGGAAAAGGAAAATAATCGTGGGGACATGGTCCAGTTTAGTGGAATAGCTTAAAGATTTGGGTGGGTAAAGAGCAGGGGCGTGCAGCTGAGCAGATGTGGAAATAACAGACAAGCAGGAGCTTGGGGAAGGCTGCAAGGAATGAAAGCACAGGTCAAGGGTCAACGTCAAAGGATCTTAAAAGTGAGAAACATGAACCTGATGGGAGAGGAGATATGAAGGGACTCCCACGTGTTAGTGGCATCATCAAGATGAGGGGAAAAACAATGAATTTAACAGCTCTGTCAGCTCTTAGCTGTTCTTTCCTGGCAGTTCTTGTACCTAGCTTCCTCAGAAGAGCAAACAGCCATGCATTTTGCATCAGCACTACTACATGCTAGGGTCTGAATGAAGAACACATTTTTCAGTCCAGAGTTCTGAGTTCTGATGTGCAAAACAATAAAATGACCAGATCTGCGGGTAGCTGTTTGGGAAAGGTTTGTTCAGTCCATCCAAGTTGGTTGTGAAAAGCTGTGGCACCACGAGCTTTGCAAATGGCACTGCCTCAACTCAGAGCTTGCACGAGACTCTCCTTTGGTGTGTGCCTAAACTGAGTGTAAGAATTGTCACTGCTGATTGGTCTCTTATTTCTGACCACGTTTCAGTGCTGCAGAATTGTAATTTACCATAGCATCAGCTTTGTTTGCACCGTGCAGGCTTTGTGTAAGGAGCTGTTTCATCTGCAGGCTGAATGTATTCTGCAAATGAATACCGTAGAAAAGGCTGGCTTCATTTTCCAGGAACCACTGAGTGACACCACTCTAAATTGTTTTAAATCATTAACTGCGTGCTGACATGACATCTAATTCACTTGGTTTCTCTGCTTTATGCATTATACAAGCTTGTTTCCTTTGGCACTCCTTTAAATTTACCTGACCTGCATTTGGAAGTGAGTCTCGGCGAGGGAGAGCCTATCATTTCTGGCATTTACACTTCCTTGTCATCTCACTGTGCCTGTGCCCGTTTGAGCTCAGAGAGAAACTGGTATCTGTGGCAGCTTTACCGGGTGCAGGAATGTGCAGCAGAGGTGAATCTGCATTCTGAAGACCTCTGCCCAGCGTGTGGCCACACGTTACCCATCACTCACTGTCCTACTTGCTCTCTGCCTTGAGCTTCTTTGTGTCAGAGGGACAGTGGTGTGCAGCAGTCCGTAAGGAGTGAGCTGCCAGGTCTCTAGCTTGGTTTGTAAACGTGTCATATTTACCATCAATCACTTCCTGGCAAGAGAGTCTGAAAATGCATAAGGCTGAAGAGAAGCCTCGTTTATGATACTGAGCATTAGCTCTGAGTTTGGTCTTGCAGCTGGAGCTTACGCGAGGTCAAGGCAGTGTTGTGTTAGTGTGTAGCAAACTCTCTTGACAAATGATATAAACAGTAGAGAGGAAATGAAAACAATAGGCCACTCGAGATAGAAAAGCAAAACAGTACAAAAGATTTTGCACCAAATGACAGCTTTGCTCACCCCAGCTCTGTTCTGCTTTTGCTTACCGGCTGTCATGCTTTGTTTTCTATACTAG
Seq C2 exon
ACTGTTTCTGGGCTCCGAGGTGATCACCAACAGCACGCCCACCAAAGAGCAGCCCAAATCCACTCCAAGTGGGAGCTCTGGTGAGAGCATGGACTCGGTCAGTGTGTCGTCCTGTGAGTCCAACCACTCTGAATCTGAAGAAGTCTGCGTCACTCCCATAGACACTCCTGATGAGCCACAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728:ENSGALT00000007530:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]