RnoINT0126445 @ rn6
Intron Retention
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:69921436-69924066:-
Coord C1 exon
chr13:69923977-69924066
Coord A exon
chr13:69921623-69923976
Coord C2 exon
chr13:69921436-69921622
Length
2354 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGGCGTTCTGTCTCCTGCAGACT
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTATGCCCTCTCCTGTGAGATCGAAGCCGCTGCTGACGCCAGCACCACTTCCCCTAAGCCTCGGAAGAGCATGGTGAAGAGACTGAGCCT
Seq A exon
GTGAGTCCCCCGTCGGGGTCCTGTCAGAGGGCGGAGAGAACTGTGTGTTCAGCAGCTCCTAATGCTCACCTAAAGGGTGCATTTTCTGTCCTGAGCTCCAAGGCACATTAGATTCATGCATTCCTCTCCTGGGCGCTCCAGCGTGGTTTTACAGTCATCTGATCACCCTCTTGTCTCGACAGTTCATTCTCCACCAAACAGCCGGGTGATCCATTGAACAATAGATTATGTCACTTTAAAAAACACCCAAGGTTTTATTTTGAAGTAAGGTCTTTATTTTGAACTCTAGGTCCTAGTTTACTAGGCCTTATGGGACCTGCTCCCAACCCTTCCTGGCTTACGGCAGTTGCTCTGGTTCACCAAGACCACTACACCAGCCATAAAGCACACCAGGCTGTTACCTGCTCAGGGCCTTCACACCAGCCCTCCTATGGCTGGAAGTGGTCTTTTCTCCTGACCAGCTTTTTTCAGATGTTGACCAGAATATTTTCTCCTAAGAGCTCTTCTGGTGGTGCGCGCTCCTCTGGTCATTCTCATCCTGTCAGCTGTTTTTCCCATAGCATTAACTTCTCCACCATGCTGTATACTGCCTGTGTCTGTATAGAATGTCAGCTCCATGGAGAGGAACTTTGGTTTTATTTGTTTATCTGTTCACAGGACCCAAATGCTACTTCACACACAGTGATTAGTGAGTATGTTTAGAGTGGATATGTTGAGCCAAAAGCCAAAGCTGTTATAAGAGCAAATGCATATGCTTATAAAATCAACAACATGATCTAGGAAAGTTTCTATAATTAGCTCTGATCAGAACCCAGGAAACCGAAGTATGGAAACAGTATCATGTGCTTATAATGGGAGGTCCAAATGCAGACTCAGCTTCGGCTCAGAGTTGACTTCACGGAAGTGTTACCACACGGTGAAATTACATTCTAAAGGAAGACAGAGGTGGAAGGGTTAAGGGAGAGGAGAAAGGGAATAAAAAGGTGCTCATGTGATCCAGGCTTGGACTGTACCAGTTTCTGTAGCAGGAGCTTGAGAGGACCTACCCTGCTCCCTCAAGCTGATCGTTAGAATCCAAGGAATCAGAGAAGGCAGGTGTTAACTCTAGAAGCTTCTCTCTCACGTGGATCCCTTCACTTACAAACTTGAGATCGATCTTTCGGGTGACTTTACTGCACTGGCTAGGGGCAAACAAGGACTGTCCTTAGGGCCTACTGGACAGTTCTCCCTGGTCAAGTAGCCCACCTCAACATTTCCCAGGCACACCAGTTAGCTGCCTGCAGACATCTCGGTTATGTTCGTGATGTGAGTGCAATGCTTCCTGGATCAGTGAGCTGTTGTGGCTCAGCAGTTCTAGAATCTTCTCACACCCTTTTCCATCCTCAGTGTCTCCTGGCTGTCCTCACACACATGTGCAGGTCTTTCTGTGTGCTCATTACACCTCTTAACCTCTGTTTCCATAGCTTCATGGCCCTCAGGTCCCTCGTGCATAGACAAAATTTATTCTGTACAAATTCAGGCCAGGCCAGACAGACTTCCCTGTTGTCTCCTGTGTCTGTGGGAAGATACTCTTCTAGCCTATCTCCTTACCGAGGGTAAAGCTCTTGGAGTGCCTGGCTTCATAAACGAGAAGAGATGCTATCAACCTTACTTTAGTGAGCAGAACCCTCATTTCAGTATGTATGTGTTAAATCTGTGATCAGTTCATACCGCATGCATGTACGGAAGTATCAAACGGAACCCCACATTATGTGTAATTACATGGTTAGTACTTTCTAAAACAACGATTGTTTTGCCAACATTCATACGCTCTGTTTCCCAACCAGAGCAGCTGCAGAAATAGCTCATCAGCTTCCGACTTTCAGTTCCCTTCTCTCTGTAAGGCCTGGCCTTACAGAAGGGATTTCCCTTACATCTTACCAGCTCAGCTCAAAAGAGGTTTTACTATTTCTTACCTAGTTTTTTTATGGAGAAGGACTTGGGTTACGTTAGTTTGCAGGATGGCCTGAAGCAGAAGTGTTCTTCCTCGGCTGCTTCTCCTGAACACACACACCTTTCCAGTGTCACAAAGCGCAAAGTTCATTTTAGGCTGCGAAGCAATAAGGGGTGGGTGTGGATATTCTGACCCTGTCACAGTGATCCATTGACTGCTAAAAGATGGAGGACCAATGACTTAGGAAGATTCTGGCTGCATCAGTTAAACGGCCTATAGAAACATTATACTACTGTGTTTTGTTTTAATTTACAATAGACATGATTGAAAACGTTAAGGGCACAGTCGGCATACACTGTTTAGTCAGTCCTGGGTTCTGGGTTTGTAACAGCCTGGATATTTGGCGTTCTGTCTCCTGCAG
Seq C2 exon
ACTGTTTCTGGGGTCTGACCTCATCCCCGGGAGCACCCCCACCAAAGAGCAGCCCAAGTCCACAGCCAGTGGGAGCTCTGGGGAGAGTATGGACTCAGTCAGCGTGTCATCCTGTGAGTCAAACCACTCAGAGGCCGAGGAGGGCTCCGCCACACCCATGGACACACCAGATGAGCCTCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347:ENSRNOT00000067135:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]