MmuINT0134149 @ mm10
Intron Retention
Gene
ENSMUSG00000026482 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
Coordinates
chr1:152528273-152531595:-
Coord C1 exon
chr1:152531506-152531595
Coord A exon
chr1:152528460-152531505
Coord C2 exon
chr1:152528273-152528459
Length
3046 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGGCATTCTGTCTCCTGCAGGCT
3' ss Score
10.66
Exon sequences
Seq C1 exon
CTACGCCCTCTCGTGTGAGATTGAAGCCGCTGCCGACGCCAACACCACTTCCCCTAAGCCTCGGAAAAGCATGGTGAAGAGGCTGAGCCT
Seq A exon
GTGAGTCCCCTGTCAGGGGTCCTGTCAGAGAGGGGAGAGGACCGTGCATTCAGTAGCTCTGAATGCTCACTTGAAGGGTGCATTTTCTGTCCTGAACACAAACAACTCATTAGATCCATCCGTTCCTGTCCTGGACACGCCAGCAACGGTTCTGCAGTCATCTTACATAGCCTAGTGATCCTTTGAACAGTAGATTATGTCACTTTTTAAAACTCCCAATGGTTTTATTTTGAAATAAAGTCTCAACTCTAGGTCCTAGTTTACAAGGCCTTATGGGGTCTACTCCCAACCTTCCCTCGCTTACAACAGTTCACCAAGATTCACCACACCAGCCTTCTAGCCAACCTTAAACACAGCAGGCTGTTGCCTGCTCAGGGCCTTCACACTAGCCCTTCCTGTGGCTAGCAGTGGTCTTTTTTCCTAGCCAGCTTCAGATGTTAGCATGAATGTTTTCTCCTAAGAGATCTTCCCGACGGTGAGGTCTCCTCTGGTTATTCTCATTCCTATCGGATGCTTCTCACAGTCTAGAGGAAGCAGTGTTATAATAGAAGCATTCACTGCTCATCATGTGTAGCAGACGAGGAGGCCTTCTGTGGTCAACTTTGAAAGACCTCACTCCATTTGGATAACATCCAGAGGCCTTAGACCATCTATAGGACCCCACTGCCCGGAAGCATTAGTACCACCCTGTCGGCCTGGCTCCACCTCTCTGTCCCCTCTTTCTGGTTCACTCCACACTTTGTACTTCAGCTACCTCAAGACCTCCCCACACACCAGGCAGTCGTTTTTAGTTGCTTTTGTTCTACTAACTTTTCTCCCAAAGAGCCACCTGGCTCACTTTCTCACTTCCTTTGGGTGTTTGTAGAAATGTCATCTTGACAAGCGTGTTGGACACTGTAGCCCTTCATCATATCTGTCCTTGACACCCTCCCTTGATTGTCTTCTGTCTTAATTTTTTTTCCATCGCATTATCTTCTTCCGCCATACTGTATACTGTATGCGTCTGTATTGAACTTAAAGTCCATGTAGAGAAGCCTCGGTTGTATTTGTCGCTCAGTTCACAGGGTCTAAATGCTGCCCCCACCCCCAGTAAGTGATTAGTGAGTATGTTTAGAATAGATAAATTGAGCTGAGAGCTAGGACTGTTATAAGAACAATGCATATGTTTATAAAATCTACAACATGATCTAGGAACCAGTTTCTATAATTAGCTCCAATCACAGAGCCCAGGAAACCAAAGTATGGAGAAGGTGGTTCAAGCGCTTCTAATAGAGGACCAGAAAGCATATTCAGATTCAGCTCAGAGTTAAGCTTACAGAAGTTTTACTGTACAGTAAAATTACATTCTGAAGGAAGAGAGAGATGGAAGGTCTAAGGGAGAGGAGAGAGAACCACAGGAGAGGAAAAGGGGACTAGAAAAGGTACTCATAAGCCGGGCATGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGGGGGAAAAAAAAAAAGGCAATCATGTGATGCAGGCTTTGATTGTATCTGTGTCTGTAGCAGCAGCTTGAGAGGACCTACTCTGCTCCATAAAGCTGACCATTAGAATGTGAGGGACCAAAGACGGCAGGCGTTACTTCTAGGACGCTGCGCTCTCACACAGATCCCGGCACTTACACACCTGAGATTGATCTGGGTGATGTTCCCTGCACTTGCTAGGGGCAAACAGGGCAGTCTTTAGGGACCATTGGCCAGTTCTCCATGGTCAAGTAATTTCCCCCGGCACTTGCCAAGCCCACCCGCAGACTTCTCGGTTGTCGTGAGAGTTTGTGATGTGAGAGTTTGTGATGTGAGAGTGCAGTGCCTCCTGGATCCGTGAGCTGTTATGGCTCAGCAGTTCTGGAATCTTCTCAGGCACTGCATCTGTCTGGTCCCTTTGCCAGGCTCAGTGTCTCCTGGCTCTGCTCTTACATGTGCACAGGGCTTTCTGTGTTTTCATTATACCCCTAACCTCTGTTCCCATAGCTTCATGTCCATCAGGACCATCATGCATAGACACATTATTTCTTCTGTATTAATTCAGGCCAGGCCAGGCAGACGTCCCTGTTGTCTCCTGTGTCTGTGGGAAGATACTTTTCTAACCTGTCTCCTTACTGCGGGTAAAGCCCTTTGAGTGCCTGGCTTTATATAGATTAGGTTCTCTCAACCTTACTTTAGTAAGCAGAACCGTCATTTCACAGTGCTGTGTATGTGTTAACTTCATACACATGAATCAGTTCATACTGAAAGCATATATGGAAATATCAATGGAACCCCATTATTACGTATAATTAAATTGTGCTAGTGGTTTTTTTTTTTTTTTAACAATGACTGTTTTGCCAACATTCATTCCTTCTGTTTCCCAACCAGAGCATCTGCAGAAATAGCTCATCAACTTCCGACTTTCAGTTCCCTTTTCTGTAAGGCCTGGCCCACAGGGATTTCCCTTACATATACCAGCTCAGCTCAAAGGGGGTTATAATACTTCCTACCTAGTTATTTTATGGAGAAGGGTTTGGGTTATGTTAGTTTGCCAGATGGCTCAAAGCAGAAGTGTTCTTCCTTGGCTTCTTATTCGGAACACACCCACCTTTTCCAGCTTCACAAAGTTTAAAGTTCATTTTAGGCTAAGAATCAATAAGGGGTGGGGTGCTGTCCATGTAAAAGATGGAGGACCAATGACTTAGACTCTGACCGCATTAGTTAAACAGCCTATGTGTTATTTGAAGCTGGACATAATCAACTGGGACGTATAATTAAATTGACTATCTAGTCAATACTGTTTGTTAGAATATTATAGTATTTTCTAAAGCAATATTTACAATAGAGCATACATGATTGAAAAACATTAAGGGGTTTAATCAGCACACATTATTCAGTCAGTCATGGGTTCTAGGTTTGTAACAGCTCAGATGTGTGGCATTCTGTCTCCTGCAG
Seq C2 exon
GCTATTTCTGGGGTCTGACATCATCCCCGGGAGCACTCCCACCAAAGAGCAGCCCAAGTCCGCAGCCAGTGGGAGCTCTGGGGAGAGTATGGACTCAGTCAGTGTGTCGTCCTGTGAATCAAACCACTCCGAGGCTGAGGAGGGCCCCGTCACACCCATGGACACACCAGATGAGCCCCAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026482:ENSMUST00000027760:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types