BtaINT0124440 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7410118-7410391:-
Coord C1 exon
chr23:7410359-7410391
Coord A exon
chr23:7410240-7410358
Coord C2 exon
chr23:7410118-7410239
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTCTGTGGGCTCCTTCCTAGGAG
3' ss Score
6.58
Exon sequences
Seq C1 exon
AATGGATACATCAATTTTGACAAGCGGAGGAAG
Seq A exon
GTGAGGAGAGTGCTTGGCCATATGCCAGCCATCTGTAGCCCCATCCCAGGAAAGGGAGAGGAGGGCGAAGTCAGAGCTCCCTGGATTGGGCCTCCTGCAGTCTGTGGGCTCCTTCCTAG
Seq C2 exon
GAGTTTGCTGTCCTTTCTGAGCTGCGGCGGCTCCAGAACCAATGTCGTGGCTATGACCTCCGACCTGACCCCGATATCCAGCGGTGGCTACAGGGGCTCCGGCCACTGACAGAGGCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827:ENSBTAT00000022385:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.5=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAATTTTGACAAGCGGAGG
R:
CTCTGCGCCTCTGTCAGTG
Band lengths:
148-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]