RnoINT0126461 @ rn6
Intron Retention
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5460785-5461108:-
Coord C1 exon
chr20:5461076-5461108
Coord A exon
chr20:5460907-5461075
Coord C2 exon
chr20:5460785-5460906
Length
169 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTCTGAGGCCTCCTTCCCAGGAG
3' ss Score
4.17
Exon sequences
Seq C1 exon
AATGGCTACATCAATTTTGACAAGCGGAGGAAG
Seq A exon
GTGAGAAGAATGTGGGGGCTCAGGGCTGGGTGGTGGATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCGGGGATGGGGTGTGGGTAAGGGTGGTGAAGTCAGGGGCCCTGAGTTTTGGCTCCTGCAGTCTGAGGCCTCCTTCCCAG
Seq C2 exon
GAGTTTGCTGTCCTTTCTGAGCTGCTGCGCCTCCAGAACGAATGTCGTGGCTATGACCTCCGACCTAACCCTGATATCCAGCAATGGCTCCAGGGCCTCCAGCCATTAACTGAAGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474:ENSRNOT00000000554:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.171
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.5=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTACATCAATTTTGACAAGCG
R:
CTCTGAGCTTCAGTTAATGGCTGG
Band lengths:
154-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]