HsaINT1029209 @ hg38
Intron Retention
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33293795-33294066:-
Coord C1 exon
chr6:33294034-33294066
Coord A exon
chr6:33293917-33294033
Coord C2 exon
chr6:33293795-33293916
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTTGAGGGCTCCTTCCCAGGAG
3' ss Score
2.56
Exon sequences
Seq C1 exon
AATGGATACATCAATTTTGACAAGCGGAGGAAG
Seq A exon
GTGAGCGGAGTGTCTGGGCTGGATGCTGGACTTCCCTATCCATGTTCCAGGAAGGGGAGGGGGAAAAGTCAGGGGTCCCTGAGTTTTGGCTCCTGCAGTTTGAGGGCTCCTTCCCAG
Seq C2 exon
GAGTTTGCAGTCCTTTCTGAGTTGCGACGGCTCCAGAATGAATGTCGTGGCTATAACCTCCAACCTGACCATGATATCCAGAGGTGGCTACAGGGGCTCCGGCCACTGACAGAGGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441:ENST00000497454:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.5=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAATTTTGACAAGCGGAGG
R:
CTCTGAGCCTCTGTCAGTGG
Band lengths:
148-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains