MmuINT0134164 @ mm10
Intron Retention
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33934975-33935255:+
Coord C1 exon
chr17:33934975-33935007
Coord A exon
chr17:33935008-33935133
Coord C2 exon
chr17:33935134-33935255
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTCTGAGGGCTCCTTCCCAGGAG
3' ss Score
3.06
Exon sequences
Seq C1 exon
AATGGCTACATCAATTTTGACAAGCGGAGGAAG
Seq A exon
GTGAGAGGAGTGTGGGGGTGGGGCTGGGTGGTGGATTTCCCTCTCTGTGTTCCCAGGAAGGGGGAGAGGGAGGTGAAGTCAGGGGCCCTGAGTTTTGGCTCCTGCAGTCTGAGGGCTCCTTCCCAG
Seq C2 exon
GAGTTTGCTATCCTTTCGGAGCTGTTGCGCCTCCAGAAAGAATGTCGTGGCTACGACCTCCGACCTAACTCTGATATCCAGCAATGGCTCCAGGGCCTCCAGCCTTTAACTGAAGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354:ENSMUST00000047503:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.5=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTACATCAATTTTGACAAGCG
R:
CTCTGAGCTTCAGTTAAAGGCTGG
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types