DreINT0126426 @ danRer10
Intron Retention
Gene
ENSDARG00000007727 | rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:ZFIN;Acc:ZDB-GENE-010131-1]
Coordinates
chr16:45408937-45410453:-
Coord C1 exon
chr16:45410421-45410453
Coord A exon
chr16:45409059-45410420
Coord C2 exon
chr16:45408937-45409058
Length
1362 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TGACATTCTCTTGATTTCAGGAG
3' ss Score
8.08
Exon sequences
Seq C1 exon
AATGGCTTCATCAACTTCGATAAACGACGACGG
Seq A exon
GTGAGTTTATGAAGAACAAACTTAAGCGTCATTTATATAAAGGGATAATTCAACCATAAAAATAAAAATCAGCTGTTAATTAGCTCATTATATGGCCAACAAAGATGTAGGAGACATGTAGGAGATTATTCTTGGTGGGTAACACAATACAAGTGAATAGTATATACAAGTAAGCAAACATACAGGTAAAACAATGGCGTATGACGATATATTGTGGTCTTTTTAAGTGAAGTGATTAGCCTGTGTAAGAAACTCAACATTTTACCAAAATAATAGTCAAGCCCGTCGGCGCAATAGCCTAGGGCAGGGGTCGGGAACATTTTTTTTAGCAAAGAGCCATTTCTAATTTTTTTGGCAATATGCATTTTTTAAAGAGCCATTCGAGGTGTGTGTGTGTGTGTATATACATATATTTAAATATATTTAAATATATTTAAATATATATATATATATATATATATATATATATATATATATATATATATATATACACGTGTGTGTGTGTGTGTATTTATTTATGTATATATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTATGTATTTATATATGTGTGTAAGCATGTATGTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATTATTATTTTTTTATTCACAGTTAAAGCCAGAATTATTAGCTCCCCTTTCAATTTTTTTTTAGAAATTTTTTAATTAATAGCGCATTTAAGCGATATATTTTTTCAATAGTTGATGTAAAATCAAATGTAAATCTCTGAATATGTGAAAATAAAATATTTTAATGACATTAATTCTCTATGGTTACAACTGAGTTAGTTACAAGTAACTGTATAAAGAGATTAAACACGTAATGATAAAAACATATGATATTAATTGTACCCAGCTTAAATGTCAAATAAAGTTACCTAAGAAAGAGAGAGGGAAAGAGAGATAAAGATCAGTAAGGCCTCAAAGAGAGTCTGATAACAGTAGAGTCAGAGAAGATAGCCTCCAGAGCAGGAGAGGAGCAGAGCAGCTAAAGAGACAAAAGCAAAGTTTACCACATATTTTGTATCTTTCTTGACCATGTGACCAAATCCTAATTACTCAGACATTCAAACTGACCAATCAACATGTGACATCATTATAAACCCGCAAAGTCCACACACCAGGCCCTGATCTAATCAGTATCTGCCTTTGGAATCTGTATGGACCTTCTTGGTGAAAAAGACACGTTTTGCCATATAAGCAAATTATTTACCTATGATAATTTGCATTCTTACAATAGTTTCAAAAGTATTAACATGACATTCTCTTGATTTCAG
Seq C2 exon
GAGTTCGAAGTCATCGCTCAAATACGCCTCCTACAGTCCTCATGTAAAAACAGCATTTTTCGAACCGACGAAACATTCATTCATTGGTATCACAGTGTGCCCACTCTACGTGAAGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007727:ENSDART00000004052:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(4.7=100),PF094555=Cas_DxTHG=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]