BtaINT0125525 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51069881-51070258:-
Coord C1 exon
chr22:51070187-51070258
Coord A exon
chr22:51070002-51070186
Coord C2 exon
chr22:51069881-51070001
Length
185 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
TCTCACACCTGTGTCTACAGAAC
3' ss Score
7.72
Exon sequences
Seq C1 exon
GGTGAAGCTTCCAGGTACATCTTCCTGACCAAGTTCCGGAAGTTTCTGCAGGAGAATGCCAGCGGCCGGGGG
Seq A exon
GTAGGTGTCCCCACCACGGCCCCCCAGCTGTGTCGTGTGGTTTGCACCTGGTTTCGGGCACCGTCTGCTCGTCCCCTGCTGCCCCGCCCTCCCCACTGAGTCCCGGGTCCCAGGGCAGGGCCTCGGATGAGGAGCAGGCTGGCCCCTGGGCCACACAGACATGTGTCTCACACCTGTGTCTACAG
Seq C2 exon
AACACACCCATGCTCTGCCCCCCCGAGTACATGGTCTGCTTCCTGCACCGCTTGATCTCAGCCCTGCGCTTCTACTGGGACGAGTACAAGGCTTCGAAACCACGCACCTCCTTCAGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGCTTCCAGGTACATCT
R:
CTGAAGGAGGTGCGTGGTTTC
Band lengths:
188-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]