RnoINT0127627 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116844160-116844541:-
Coord C1 exon
chr8:116844470-116844541
Coord A exon
chr8:116844281-116844469
Coord C2 exon
chr8:116844160-116844280
Length
189 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
ATACATGTTTTCTGCCCTAGAAC
3' ss Score
8.59
Exon sequences
Seq C1 exon
GGTGAAGCTTCTCGGTACATCTTTCTGACAAAATTCCGAAAGTTCCTGCAGGAGAATGCCAGTGGCCGGGGG
Seq A exon
GTAGGTATCCTCCAGGGTGGCGACTGTGGGCTCCCAGCTGTGTTGCAGGGGTTGTACCCAGGGCATCCAGCACCTCAGCCTGCCACATACCTGTCTCCTCTGCTGACTCCCTCCTGGGATCCTGGCACGGCCTTGGATGAGGAATGAGCTGGGCTCTGGGCTGGCACCGATACATGTTTTCTGCCCTAG
Seq C2 exon
AACACACCCGTGCTCTGCCCCCCTGAGTACATGGTCTGTTTCCTACACCGGCTGGTGTCTGCCTTGCGTTTCTATTGGGATGAATACAAAGCTTCCAACCCCCGTGCTTCCTTTAGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGCTTCTCGGTACATCT
R:
CTAAAGGAAGCACGGGGGTTG
Band lengths:
188-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]