BtaINT0125527 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51075098-51077849:-
Coord C1 exon
chr22:51077765-51077849
Coord A exon
chr22:51075181-51077764
Coord C2 exon
chr22:51075098-51075180
Length
2584 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CAGCCTCTCACTCTCCCCAGGAA
3' ss Score
10.15
Exon sequences
Seq C1 exon
GCATCGTGCATGAGAAGCTGCTGAGCGACTACCTGCACCGTGTCTTTGCCTCTCCTGATCACAGACCCGCGGCAGCCACCAGCAG
Seq A exon
GTATGGCCGGATGGCTCTCCCCTTCCTCTGCGGGGCCAGACCAGAGGCAGGAGGCTGGGGTGTGGGGAGGGAGGCTGGGCTCTGGGGAGGCTGGCTTGCGTTCTGTCCTCGCTCTGATGCTCCTGACTGCGAGACCTGTGGCCCAGAGAGTACCAGAGTCTGTGCCCTGGCGGTGCTGGTACCTCCCTTGAGGGAGTAGCGGAGGTCAGGGGCACGGTGCAGGCTTAGTCCTCAGTGTGGCACTTCACACCTGCTCTACACGCAGCATCTGGTCTGTGCGCCCCTGCCCTTACCTCCAACGCACCCTGGCCCTCTATAGCCTCTGCTGGATCTATAATATGCAGACTCCACCAGCCCTTTATTTCCTGTACGTTTAATGTATTTAAGTTGAGCTTATATCGAAGTTATAAGTGCAGTTTAGCAGCAACTTGTAGAAGCAAAAGTATCTGCCATCTTCTTCTAATATAAACGACCGCTCATGATTCCATTTTGTGTTATCTCGTAATGTATGCAGTTTGGGTTTTGTCGTGTGCGAAATTTGCTTAAAATTTTTGTCACTGTCAGTTTCTTTAAAGTTATTGAGGAATAGGTGGCATACCATAAACTGCGTGTATTTAAAGCACACCATCTAGTAAGCTGTGACACAGATAACCTGAGAAACCATCACTGCATGGACATACCCAAAAGCTTATCGGAGTTTTAAATCCTGTTTTTGTCATCAGAGGTTATTCCTGCCTGGTTTTCTACGCTACAGATTGATACTAGTGGGCATCTTTTAGGGCCAGGAATCTGCCTGAGCACTGCCCTGGTTTAGGGGGGCTTTGGTTTTTGTAAACAGTGCTGCATGGACGCCCAGGGTTGGGATCACGTGCCTGGAGTGTTTGAATCTCAGTCACTCGTAGGACTGCTGGTGAATTTCTTCTTCTTCAAAGGGTTCTGAACATTCTTCCTCCCTGCAGTGAGGCATGGGTGTCCCTATGTCTCAGCTCCCTCGCCAGCCAGCTTTGTTCTGTCTTGCACAGTCTCTGCTCACTGGGCAGGCCCAAAGGGCCCCCTCTTCCATTTTAGCAGCCATGGTGGCCAAAGGGTTTCCACTTGTGGAGGGCTGGGGCCCACCTCTATCCCAGCCCCAGTCCTGGCCTGTCCCCAGGCCACCCGATCCCTCCCTCATGTGACGGCAGGAATGATCCTGCTGCCACTGGCACCGCTATTGCCAGGAGTGAGAGCAGGTGGCGGAGCCGTTAGTCAGTGGTGCTGGGGACGCAGAATTCTGGGTCAGGACCTGGGCAGGCCAGAAAGGCCAGGCCAGGGCTGAGGGTGGCCAAATGGGAGGTGCTGCAGGCATTCACTGAGGCCGAGTCTCAGACTGCCTGCCCGCAGCTGCTCTTAAAAGCAGGCACAGGACTGGGGCAGCCCTCCCAGCGTGGGCCTGTAAGAAGTGCCCTTGAGGAAGCCTGCTTGATCTGTGGGCCCGCTGGGGGTGTTAAGACACAGAGGGGCTCCAGCCTTCCACGTTACTGGCAAGGCACCCCACTGCACAGCTGCCTCCTGGCCTTGACCTGGGGCTCCACAGCAGTGGGGAGGAGGCTTCGTGAGTCTCTCCTTCTTGCAGCCCAAGGTCAGTTGTAGCTCATGGTGTGGGAACATAACGGCCCCTGGGCCTGGGCTGAAGCTACTTAGCCATAGAGTCGGTGTGCTGGCCCATCCATGTGCTCTTCCAGGGCCTGACCTCTCGGGCGGTGAGCAGGCTGTGACCTGGGATTCGACATGGAAGAGCAGGTGCCAGCAGTCTGTGGGCTGGATCCGGATGGGCCTTGGGCCTCTGCTCCTGGAGCCCTGCTAGTTACCACCACCTCATTCCTGGCTATTCTTAGCAGCTGAGCTCAGGATTAGCTGGCCAGCATTAGGCAGAGCTCTTTCTCCTCTGGGCATGTGTGCTGGGAGGATGAGGGGGCCACTCAGACACATCCTCCCGGCCCCTCTGGCCGGGGCAGGTGGCCTGCCGTGTGCTCTCCTCTCCTCTGCAGGTGGGTCCAGGACACAGCCAGCCAGAAGCTAAGAGGGCTGAGCCCTGCATCCTCCCAGGACATGTCTCATTCAACACACAGGCTTCCCTGGATGGGACCACAGACCTGGGGTCAAGGATTGGAATGGCTGGTCTTGGTACTGAGCATCCTGGGGTTCTGCGCTTCTCCCAGCCCTCCTGGCCCAGGCGTAATCAACAAGCCACCTTCAGGAGTGGGCAGGTCCTGGGCTGCACAGGGAGCATTATTGCTCGGACTCTTCACAGTATCTCTGACATACAGCTGTTGTTCCATTTGTACAGATGAGGGGATTAAGGCTGACAGAGGGATCTTCCTTCTTCTTTTTTCTTTTCAAATCAGTCTTGCAATGCTCCAAGTTTAGTGGATAACCCAGTCTCTGACCCCCAGCATCCCAGAATGTGGGACTGGCACACCCCTTGTTCTGGAGTCTGGGCAGCCACCCTCCTCAGCTCAGGAGAGGGGACTGGGAGAGGGGTTTGGCGTCATCTGGCTGGTTTCAAGGACTTGGGGGCCCCCTCTCAGCCTCTCACTCTCCCCAG
Seq C2 exon
GAAACCCCTGAACTTCCAGAACCTGCCAGAGCATCTGGACCAGCTGTTACATGTGGATGACAAGGAAGACGAGGAGAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]