GgaINT0022693 @ galGal3
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2179771-2182163:+
Coord C1 exon
chr12:2179771-2179858
Coord A exon
chr12:2179859-2182083
Coord C2 exon
chr12:2182084-2182163
Length
2225 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGTATGTGTTTATTCCCTAGAAA
3' ss Score
8.76
Exon sequences
Seq C1 exon
AAGGGATTGTGAACAGCAGGCTACTGAATGACTATCTGCATCGGGTCTTCTCCAGTGCTAATGGGAACCAGCCTGCAGCTGCTTACAG
Seq A exon
GTATGGGACTTACAACTTTCTAGATGGTAGTGATGCTGTGTCGGTCCCCTGCATGTAAAACCCCATATAAAATGTCACAAGGCAGTATTTATGAAATAAATAGGCAAGTATGCATTCCCCTTCTCATTCCTGTTCCCTCTCTGCTTGCGAAGAAGTGCAAAATGCCCAGGTTTTAGCTAATGAAAAGTATGTCATCAGTGCCTGGTAAACTAAATGCAAGGCTGCTACTTGTACGTCGAAGACCGTATGCTTCTCAGGCAGTGGAATTGTCCGTACTTTTCTTGTTAGGAGTCACCAAAGGAAAAGAAACACAGAATTGCTGTACACTGTCTGTTTCCGTCTCTTTGCTTTCATTTCTCCTTCAACTTGTAGCTTTGGATGAGAAAAGCTCCTTTGCTTTTAAATCTTTTGGCAGAGGCAAGTCAGTTGGGTGCAAAGCAGGTCCAAGTGTTGCAGAGAGCAGGCATGTAGCTGCTGCTGGGTGGGTGGTGCTGCAGAGTGGGCTGGGGTCATGTTCCCCGGGCTATACTTAGTAGTGCCAGCTCAAATGTGAGCCTGTGGCTGCTAAAAATAGCTCTTGGTCTTCTGTGTGCTTGATGAGCTAAGGTTCTTGTGGGGGGAGGCAAGGTGGGTTATGTTACTTGGCCACACGCTTTCCTGCCAACGTGCCTTCGTATGTTCCGTCTGCCCAGGCGTTTTGGTTGTCAGTACTGCTAACTTCTTTGCCAGACGATGAATGAAGTGCAGGCACAGAACTGATATTTTGTTGGATTGGTCTCTCTGTAGCTCCCTTCCAATCCTCTCCCTGGACTTGGTAGAAAGCCCAGTAGCAGTCAGATTGGTCTCGAAAATAGTATTAACTACACAAGAGCAACTTTTATGGTATGCTATGTTGTCTTTTGGGGAGATTGTTGTAAACCTCTCTGGCTGTCCTCTCTCTGTCTGTCTCGTGCTCTTCTGCCTCTTTCCTGCACTCCTTCTCCATGCTAGCTGCCGATACAGCTGCTTTGCTGAAGCCACTCTCTCCTGCCAGTCCAAAGCTGCTTCTTTGATTCCACTTCTGTGCATCTTCACATCCATTGGGCTTTCAGAATGTCTCTCACCACTTCTTCAAAAAACCTCTGGTCCCAAAGAAGTGGAATGGTTGTTCCACGGATGAGTACTAATGGGAGCCAGGGTAGGAAAAGCCAGCAATTCTCACAGTAATAAAGGGAAATCACGGTGGTCCTACAAGCACAACACAAGCAGTGCCATTCTGTTAATCCTTGGGAAGTTTTAAAAGGAAAAGAGTATGAAATGACAAAGTTTGCTGCTATTACAAAGTGATGGGAACAGCCCCAACTTTACGCATAAAGTAATGGGGTCTGTGCTGATTTCTGCTGCACAAGAGTGAGACTACAGGGAGATAAACTCTTTAGTAAGTTAGAAGAAAAAGCAGATAGGAAGTAAAGGATTGTTAGACAAGGGATTCTGGGCAAAGAAGATCATTATGCCACAGAATGAATTTATGGTCAGACCTCATCTTGATTAGCATGTTGTGGTCGCACCAGCTTCAGAATGCTATCTTGGAGCTGTTGGAGATTTTGAGGAAGAGTAAGAGCAACAGCCACGAGTCTGGAAGGTCTCCTGTACAAGGAATAACTAAGTGAGCCAACCTTGAGACGAGAGAACTGAGGGGATCTGTGTGGAAGGTCTCTACAGTGGTAGCCTGGAGGGTGTTGGCGAGGCATTTACTTTATTACAGAAAGTGTGAAGACAAATTGTTTTTGGCAGTTCTCATGGAGATGATGCTGGGCGAGCTTGACCTCTGTCTGAGCTGCTACAGCTGCTGCTATGGTCTTCTTTCTGGTTTTGTATTATGAAGTACTTGGGAAAAGAGCTAAGTCCTGTCCTATGCTGTGTTTGTATGATGCCAGCCTCAGCAATGTCCCAGTCTTTACTCATTGCCAGTACAGGCTGGCAAAATACTCCTTAGCAGGCTGAAGACTGAAGGGTCCTCTGTTAACTGCTTCATTTGTTCGCACTGTATTTGGTTCTTGTTCCATTCATTGCACCAACATGCTGGTCAGCAAAGTCCTCAGATCCATGACAAGAAACTCAGATTGACAGAACTTCCTTGGTTCATGTGTCAACACGATCCTATACTGACACGTGTCTGAACTGAAACACTTTAGAACTCAAAGGCAGAGCTTTCTGAAGTGCTCCTGTATGTGTTTATTCCCTAG
Seq C2 exon
AAAGCACCTGACGTTCCAGAACCTGCAGGAGCACCTTGAGCGGTTGCTAGCAGAGGAGAATGGCTCTGAAGACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]