BtaINT0125538 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51074877-51075180:-
Coord C1 exon
chr22:51075098-51075180
Coord A exon
chr22:51074972-51075097
Coord C2 exon
chr22:51074877-51074971
Length
126 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGAT
5' ss Score
2.55
3' ss Seq
CCCTCTTCTCTGTTTTTCAGAAC
3' ss Score
12.42
Exon sequences
Seq C1 exon
GAAACCCCTGAACTTCCAGAACCTGCCAGAGCATCTGGACCAGCTGTTACATGTGGATGACAAGGAAGACGAGGAGAGCCAGG
Seq A exon
GTAGATGACAGCGTCAATCTAGAAGGGGGTTCAGGGGCTGGGTGGGCCTGGGGGGCTCGGTGCCCTCTCTGTGTCTGCCTGAGCCTGTGCCCGGCCCAACCCCTCACCCTCTTCTCTGTTTTTCAG
Seq C2 exon
AACAGGTTGAGGGGCGGCTTGGCCCGTCCACTGTGGTCCTCGACCACACAGGTGGCTTTGAAGGGCTGCTTCTAGTGGATGATGACCTCTTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=NA C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCCCTGAACTTCCAGAACC
R:
CCCCAAGAGGTCATCATCCAC
Band lengths:
178-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]