GgaINT0022694 @ galGal3
Intron Retention
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2182084-2183080:+
Coord C1 exon
chr12:2182084-2182163
Coord A exon
chr12:2182164-2182982
Coord C2 exon
chr12:2182983-2183080
Length
819 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TCTACAACTCTTTGTTTCAGATC
3' ss Score
9.38
Exon sequences
Seq C1 exon
AAAGCACCTGACGTTCCAGAACCTGCAGGAGCACCTTGAGCGGTTGCTAGCAGAGGAGAATGGCTCTGAAGACAGCCAAG
Seq A exon
GTAGGAGGCACAAGATACCTACAGTCTGTGTTTGTGCTGTCTCACTGGGGGGGACAAGTTATGTCATGCAACACGGTTCCCTGAGTAAGCAGTTTTCTGCCATCTTGTGCTCTAATTTATTGTCCCTTTACACCCTGCCTGCTAGCAGCCTATCAGACAGCCCTCAAGCAGGTCTGCTTGTTGATGGAGGAGGCATGTTTCCAGGTGGAAATGCCTGAAAAAGCAGCTTTGGAGCAGTAGTTGGATATATTTCAGTGATAGCGACATGCAGAGCCTTTGCCATGACCAGCTGTGAGGAGTGCTGTCCTCTCTGGGAATCACAGAGGCCTGTAGGTGATTTCTGTCTGTGGGTCTCCTCTGTGGATGGCTGGTTAGGGCCTCAGCCTGTTGCCTCTGTTCTTGCTAGCATCCATTTCCCTGAATGAGGCAGGATGTGGCAGGATGCATCCTGGCTCTTCTCCTACAAAGCATTTTTCTTGCAGACCACAGTCAGAGCTTGCCTTCAGTTATGTGATACATTGGCCAAATGTTTGGCTCAGAGTTTGACCTTTGAATTTGCAGAGGTAAAATTTTCAGATGACGTGAAGGCTTCACTTATGATCTGACTGCTGCGTAGCCTAGGCCTAGGGTGTTGCTGTGCAAGCTTCCTTTTAAATCTCATGGGTGTCTCCTTTCCTGAAGTTCTCATGGTCTGATGTGTGCAACACTGTTTGAGTGCAGAATTCAGGTGCCATTTTAGTCTATCTGGTGACACTTCAGAGCTACCCTTAAATCCTGCACATCTTTTCCTAACAGGTTATCTACAACTCTTTGTTTCAG
Seq C2 exon
ATCAGTTAACAGAGGGCCGGCTTGGTCCCTCTACCGTGGTGCTGGACCACACAAGTGGCTTTGAGGGGCTCCTGCTGGTGGATGATGACTTACTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486:ENSGALT00000003917:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]