BtaINT0125548 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51073922-51074368:-
Coord C1 exon
chr22:51074283-51074368
Coord A exon
chr22:51074009-51074282
Coord C2 exon
chr22:51073922-51074008
Length
274 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
CATGGATGGCTCCTCCCTAGGAG
3' ss Score
5.83
Exon sequences
Seq C1 exon
GGAAATGGATCTACGAGGTGCTCATCTCCTCCCAGGGGCTCATGCAGATTGGCTGGTGCACAATCAACTGCCGCTTCAATCAGGAG
Seq A exon
GTACCGGCGGAGAGGGGCCCTGCCCAGGCCTCAGCAGGGCTCAGGCAACCCCCAGCCCAATGCGGTCCTTTGAGGACCCTCACCTGGACTGTCCTCGGGAGGAGGACCATGTCCCACCCCATCCCAGGACACCGCAGCCCCAAAACAGCCCTCCTGCCTTCCCTGGGCGCATCAGCCCCCTTCAGTAGAGCCGTGTGGGTCCAAGGCTGGTGGCTGGCGGGCTCTGGTCCTGCCCCTCCCCACTCCCCGGACCTCATGGATGGCTCCTCCCTAG
Seq C2 exon
GAGGGGGTTGGAGATACACACAACTCCTATGCCTACGACGGCAACCGGGTACGCAAGTGGAACGTGACCACAACGAACTACGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0062223=SPRY=FE(23.0=100)
A:
NA
C2:
PF0062223=SPRY=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGGATCTACGAGGTGCT
R:
TTTCCGTAGTTCGTTGTGGTCA
Band lengths:
172-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]