RnoINT0127652 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116848108-116848549:-
Coord C1 exon
chr8:116848464-116848549
Coord A exon
chr8:116848195-116848463
Coord C2 exon
chr8:116848108-116848194
Length
269 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAC
5' ss Score
2.13
3' ss Seq
CTCACAGCAGTTCCTTCTAGGAA
3' ss Score
0.27
Exon sequences
Seq C1 exon
GGAAATGGGTCTACGAGGTGCTCATCTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGTACCATCAACTGCCGCTTTAATCAGGAG
Seq A exon
GTGCACACCAGGGAAGGGGCTCTCCCACAGGAGGCTTGTGTGGCAGGCGTCCTCAGAGCCACTCAGGAGCCTGCCTGATCTGGGTTGCCCACTGAGGGTGGTCATGCCCCGTTCTATTCGAGGGCACCTAGCATACATCCCTCCGTTCTCGCTCCTTTGCAAAAACGCCACACCCCTTCTCTAGAGTCATTAGGATTCTGGGTTGGTGACTGGTGGGCTCTGGCCCTCCCTAACCCGTCCTCCCCAGCCCTCACAGCAGTTCCTTCTAG
Seq C2 exon
GAAGGGGTTGGAGATACACACAACTCCTATGCCTATGACGGCAACCGAGTGCGCAAGTGGAACGTGACGACGACGAACTACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=FE(23.0=100)
A:
NA
C2:
PF0062223=SPRY=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGGGTCTACGAGGTGC
R:
CTTGCCGTAGTTCGTCGTCG
Band lengths:
173-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]