BtaINT0127294 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005980 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr23:47954816-47955742:-
Coord C1 exon
chr23:47955620-47955742
Coord A exon
chr23:47955029-47955619
Coord C2 exon
chr23:47954816-47955028
Length
591 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
CAGCAGTTTCTCACTTTCAGTTC
3' ss Score
6.56
Exon sequences
Seq C1 exon
TGTCGACGAGAGATACGAAGAGAAGAGAAAAAGGAGCCCCCCAGCCTCGCTGCCTCGTCCGTGCGCCCAACCCCCGCAGCAGATGACGCGCTCATAGTGCATCAGCTGGGGCGGAGAATGGAG
Seq A exon
GTAATCACCAGTGCGGGCTGGGTTTTCCTTCCTTCCATTTTCTGGGGGAAGGTACATTACATCTTCATATGTTTTAAGAAACAGCCTTTTTTATGCTGATTTGAAATTTGGTTGTAACGTTGGGTGGTGGTGTGGCTTCTCAGTTGTCTTACAGTTTGGACTCCCCCATTAAAATCGGGTATTGCGGCCTGGAGTTAGGTGAGAGCCAAGGTTTCTCACCTTCCGTTTCTGGGTCTAGAACACGCTTGCAGTAGTGAGTAGGCTGCTAGGAGGCCGCTGGCCAGATGGGCCCTCCCGGCCTTATTAACTGTTGGAGCCTTTCCCACTCTGCCTCGTGAAAGATTAGCAAAGGAAGAGGACCTGCCTTGGGTCACCTCGTCGGTGGCCCATACTCAGAAAGGAAGCAAGGCAGTCAGTTCAGTGTGACAGCGCTTGGTTGAGATGGAAGCTTCAGTCACGTGAGCACGTGTGTCGGCTGAACTGAAGGGGAGGGCTTAACCTGGCTGCAGCGGTGGTAGCCGTGGCCCCTGCCACCTGCCTGCCCGGTGCCTCAACTTCCCAGCGATCACATCAGCAGTTTCTCACTTTCAG
Seq C2 exon
TTCTGTGGCCGAGGCTTTCTAGAAGCTTAAATCCTTGTCCCAATGACGTCAAGCTCGCCCATTGGCCTGGAGGGTTCAGACTTGTCTTCCATCAACACCATGATGTCAGCAGTCATGAGTGTGGGGAAGGTCACCGAGAATGGCGGGAGCCCCCAGAGCGTCAAGTCCCCCACGAAGCCTCCGGGACCAAATCGGATCGGCCGAAGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005980:ENSBTAT00000044565:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGACGAGAGATACGAAGAGA
R:
CTGGTTCCTTCGGCCGATC
Band lengths:
336-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]