MmuINT0137349 @ mm10
Intron Retention
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37892552-37893984:+
Coord C1 exon
chr13:37892552-37892658
Coord A exon
chr13:37892659-37893771
Coord C2 exon
chr13:37893772-37893984
Length
1113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CGCTGACTTCTCTTTTTCAGTTC
3' ss Score
9.98
Exon sequences
Seq C1 exon
CATAAAGGAGTGATATCCAGAGAATAAAAGGGCTCCCCAGAGTCATTTCCTACTCCATGTGGATGACAGCAGGAGCAAGGGACTATCATTTGGGGCAGAAAATGGAG
Seq A exon
GTAATTTGCAATGGAGACAGTTCTTTTATGAGGTATAGGTAACTTTTTTTTTGGAAACATGCTTTTTAGTGTTGGTTTTAAATTTGGTTGTAATTACAGCAGTGTTGGTATCTATAGAATCAGCACACACATCCTCTTAAAACTGCATCCAGTTAGAGGAAACCTGAAGTTTCCTATCAGCTAGTTCTTAAGTCTAGAACTTTTAATTAGAAGAAAGCAAGTACAGGGTACGTGGGAGGTGCTGGCCAAACGGGAGCTCTGTTTCCTCTTGGAAAGGCTCAGGCCTTTCCAAACTCTGCTCACGAAGATTAGGGAAAGCTTGGGCTCAGGAGATGGCACACTGGATAAACTGCTTGCTATAGAAGTGCAAGGATCAAAGTCTGAATCCCCCACACCCACATTAAAAACCTAGGTGTGTATGGCACACCACACACACACCACACACACCCCACCCCACCCCACCCACCCTGTAACCCAGTGCTCAGGAGGCAGGGACAGGATACTTAGGTAGACCAGCCAAATCAGCAAGTTCTGGGTTCTGTGTGAGCACTTCCTCTGGGTTTTGTATGAGACACTTCCTTGTGCATAAAGAAGGCAACGATCAAGGAAACGACACAATAAGCACACATGGGCCCACTTACGTGCAAACACAAAACATGCCACAGTACATGTGGGATAAACAAGAAAGGGGAAAGGAAGATGCTTCAGAAGGCTTGAATTGCACTGGTGCTAAGCACTTGGAACAGAAAAGCCTTCCATCAGTATAAAAAAGCTTAAGCTGCTTTGGAACTGGGTGTGGTGGCTCACACCTGTAATCGCAGTACTTGAGAGCCTGAAGCAGGAGGATTGGGGAGTTCTGGTCATTCATGGCTACATAGTGTGGCCAGCCTGGGCTACATTGCAAGCTCCTGTCTCAATAAACACAATGAACAAACTGAAATAATAATTAATAATAATAATAATAATTTTGAGCTCTCTTCTGGGTTTGGGTTGAACTAGGGCAAGGGTGTTGGGCATTTCTGTCTCTTTTACCATGGTAGCTATGATTAGCACCACATGACTATGATAATCCTACACTTTCTCACAAGGACATCGCTGACTTCTCTTTTTCAG
Seq C2 exon
TTCTATAGCAGAGACTTCTTAGAAGCATAAAACCCTGTCCCGATGACGTCGAATTCGCCCATTGGTTTAGAAGGCTCAGACCTGTCTTCCATCAACACCATGATGTCAGCAGTAATGAGCGTAGCGAGTGTCACAGAGAATGGTGGGAGCCCCCAGGGCATCAAGTCCCCCATGAAACCTCCAGGACCAAATCGGATTGGCAGAAGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087:ENSMUST00000110238:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.970
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCCAGAGAATAAAAGGGCTCC
R:
CTGGTTCCTTCTGCCAATCCG
Band lengths:
310-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types