RnoINT0129329 @ rn6
Intron Retention
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27597809-27599228:-
Coord C1 exon
chr17:27599122-27599228
Coord A exon
chr17:27598022-27599121
Coord C2 exon
chr17:27597809-27598021
Length
1100 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CTGTGATTTCTGTTTTTCAGTTC
3' ss Score
9.88
Exon sequences
Seq C1 exon
TGTAAAGGAGTGGTACCGAGGGAAGCACAGGGCTCAGTAGAGCCATTTCCTACCCCATGTGGATGACAGCCGCAGCAAGGGACTATCACTTGGGGCAGAAAATGGAG
Seq A exon
GTAATTAGCAATGGGGACAGTTCTTTTATGATGGTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAACGGGCTATTTAATGCTGGTTTTCAATTTGGTGATGGTGACAGCAGCCTCAGTGTCTACAGAATTGGCATACACAACCTCTTAAAACTGCATGCAGTGAGAGGAAACCTGAAGTTTCCTATCAGCTTGTTCTCGAGTCTAGAACATTAATTAGAAGAAAGCAAGCACAGGGAATGTGGAAAATGCTGGCCAAACAGCAGCTGTTTGCTCTTGGAAAGGCTCAGGCCCCAAAGATTGGGGACAGCTTGGGTTAGGGAGATGGCACACTGGAGAACCTACACGCCGTGTAAGTGTGAGGATCAAAGTCTGCACGCCCAACACCCACATTAAAATACTAGGTGTGCAAGGTATGGAACACACACCCCACCCCACCCCGTAACCCATTGCTCAGGAGGCAGGGACATGATCCCTGGGCAGTGGGATTGGTAGACCAGCCAATCTGCAAGTTCTGGGTTCTGTGTGAAACATTTCTTTGTGCATGAGGTAGACAGCTATCAAGTAAACTAAACATATGCACACAGTTACCCACCAACATGCAAACACAAAGCATGCCACACAATACGTATTGGATAAAAAAGAAAGGGAAGAGGGATCTACCTCAGATGGCTTGAATTGTACTGGTGGTGTGCACTTAGAACAGAAATGGGTTACATCAATAGAAAAAAGCTTAAACTGCTTTGAAACTGGGTGTGGTGGCTCACACCTCCAATCTCAGCGCTTGGGATCCTGAAGCAGGAGGACTGGGGAGTTCTGTATCCATGGCTATATAGTGAGCTTGGTCAGCCAGGGCTACATAGCAAGCTCTTGTCTCAATAAACAAACTAATAATAATGACAATGATAACAACAACAACAATAATAATAATGGTAGTAATAATAATAATTTTGAGCTCTTCTGGGTATGGGTTGAACTAAGAAAAGGGTGTTGGACATTTCTGTCTCCCTTACCATGGTAGCCATGATTAATTAGCACCTCATGACTGTGATAAGCCTAAACTTGCTGACAAGAACATCTGTGATTTCTGTTTTTCAG
Seq C2 exon
TTCTATAGTGGAGACTTCTTAGAAGCATAAAACCCCGTCCCGATGACGTCAAATCCGCCCACTGGTTTAGAAGGCTCAGACCTGTCTTCCGTCAACACCATGATGTCAGCAGTAATGAGTATATCGAGTGTCACTGAGAATGGTGGGAGCCCCCAGGGCATCAAGTCCCCCATGAAGCCTCCAGGACCAAATCGCATTGGCAGAAGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701:ENSRNOT00000060218:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAGGAGTGGTACCGAGGG
R:
GGTTCCTTCTGCCAATGCGAT
Band lengths:
318-1418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]