GgaINT0096704 @ galGal4
Intron Retention
Gene
ENSGALG00000012799 | RREB1
Description
ras-responsive element-binding protein 1 [Source:RefSeq peptide;Acc:NP_990380]
Coordinates
chr2:64797432-64799139:-
Coord C1 exon
chr2:64799020-64799139
Coord A exon
chr2:64797635-64799019
Coord C2 exon
chr2:64797432-64797634
Length
1385 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTTTTTCTTCTTAATTTCAGAGA
3' ss Score
9.39
Exon sequences
Seq C1 exon
TGCTAGAGGGTGCTACTGAAGAAGAGGCTGAAGAGCCTGATGCTACAAAACCTACTACACTAAGTGAGGAGACCAGCAAGCAAGAAGAGAGCCTCAGTCAATCAGGGGATAGCAATGAAG
Seq A exon
GTAACTGGTCAGACTAGCTCTGAGTGACTCTTTAATTTAGGGCATTGATTAAGGCTTGTATAAATATTTCTTACCCAATCCATAATCCTTATATCTTCCCTTGGGTGGATGGTTGGACTGGGTGATCCTGTGGGTCTTTTCCAACCTTGGTGATTCTATGATTCTGTGATTCTATGTGTGTGAAGGATATAATATACACTGAGCAGAGGCATTGGTGCTTGCTTTTCTTTCCTCATCCCTAACCTTTATCTTTCTGAAGTATATAAAATACAGTGAGCAGAAGTGTGGGCACATAAATATTCAGCTACCGCTGTAGGCTTCCAAACTAAGATTTTCTTGGCTCCAGGTAGCTTAGCACTACATTACTTAGCCTCAAAAAACACCTGTTTGTAGTGCTCAAACTTATCTTCCAAAGGCAGTATTATACAGAGATCAAATGTTCACAAGCAAACATGTTTCTCCTTGTTCACCCTCACATCCTCTTGTGTTAGAATGACTCACGCACACAAAGATCCTGTACTGTCCACCTGAGATGACAGAGTTGTGGACTTGCAGGGTATTCCTATTTGATTGGGAGATTCTTTTTTGGAGGAAGGAATGTTCAGTTTGAAAGCATTTTCCTTTTTAACTCCTTAAGGGGAAAGTGGAGGACCTTACCTGTGTGTTTGACAAGCTATGTACAAAATGCGATGGAGAAGTCTGAATCTGAGCTTTGCCTGCAGGGCAGCATCAGTTGTGGCTGTAACATATACTCAATGGACTGATACAAGTGGGTAGAACAAAAAGAAAAAGAAAATTATATCATTGCCAGCTGTGGCAGTAAAAATGTATTTTAGGGGATTTGAAGTTGGATTTCTTTTCACATTTAGCTTTTTGCTTCTACAAAGCTGACTTAAGCTATGTGAGACTGAGAAACTGGTATACTGTGCTGCCGGTGCCTCAGTTGTGCAGTTCTGCTTAAAATACATGCTTGCTTGAATTATGGTGTTTATCAGAGCATTCATTCATTGGTACTGATCTGATAGTTCATTGTGATTACAAGGTACTGCAATTAATACCATTTTACAGCAAGAAAATTTAAGGTAAATCAGTCCGTAATTCCCATACTGAATTTAGTTTGGAAGTCAAGATAATGTGATCATCCTTTAAGAAGTGATCTACACCTTGTCCTGTACATTCCGATAGGAGAAACTTTCACTATTACAAGAAAATCTTCAGTTATTATGAGCTGTTGTCCATGAAATCAGGCAGTGTGATGTGAGTTGCAGGCAGCTGAAGATACCTTGGGGTTTTCTTTGTTTGCTTTGGGTATTTTTGTTGTCGTTGTGTTTAATTTTTTAGATGGCCTAGCAACTCTTACGTGTGCTTTTTCTTCTTAATTTCAG
Seq C2 exon
AGAAGCAGCTGGAAACTTTAAACAGTTACAAGGTGACACCAAGTTCACCAAACAGTTCGGACGGAGCAGACTTGTCCTCCATTGATGCCATGATGTCAGCAGTAATGAATGTGGGGAAGATAGCTGAAAATGGGGGGACCTCTCAGACTGTCAAATCTCCCTCGAAGTCTCCTGCACCAAATCGGATTGGTAGGAGGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799:ENSGALT00000037239:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.939
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGAGGGTGCTACTGAAGA
R:
CTGATTCCTCCTACCAATCCGA
Band lengths:
323-1708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]