BtaINT0128573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047807 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr11:106171291-106172143:+
Coord C1 exon
chr11:106171291-106171403
Coord A exon
chr11:106171404-106171996
Coord C2 exon
chr11:106171997-106172143
Length
593 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CGTGTGCCCGTGTGCGGCAGCTG
3' ss Score
6.65
Exon sequences
Seq C1 exon
GAGCAGTGACCTGCAGGGCCCAGGAACTCGGCACGGGGGCCGCCCACTGGGGGCCCCGTGCCCGAGGGGAACGGCGGAGGCACACCATCACCAACGGCGTGGACTGCGCCCTG
Seq A exon
GTGAGTAGGGGCCCGGGGGCGCTACCATCTTGCCTGGGTTTGGACTTGGCCCCCACACATGTGGTTTCCTGGACCATTCCTCTGCCTGGGAGGGGACCCTGTGGCAGGAACATCGGCGGTTCTAAACCTCAGTTCCTATCCTGGTTTGAACCCACTTGGGAGCTGGCCCACGGTCAGGTCAAGAAGTCCTTTGGTCAGCCCCTCCCCGGCACTGCACTGGCCCCTACCTGCTTCCCTGGCATGTCAGGCTGGCCCACCCGCTGAGAATGACCACATGCCATAAAGGGGGGAAGATTCCCTTGGGAACCCTGTGTGGAGAGGCTAAGGAAGGCCAAGACTGCCCCCAGTCCCGGGAGGAGGAGCGGGGCTGTGTTCCCAGTGCGGAGGCGCACAAGGGCTCCTGTTGGTACCGGGGTGTGTGAGTGCAGGTGTGCAAGGAGGTGTGTTGAGCAGGGGGTTGTACTCGGGTGTGTGCGTGTGGGCCAGTATGAGTTCCAGGCACAGGCAGGTGCAGGCCATCCTGTCCTGCTGCGTGCCTGTGTGCAGCATGGCACGTGCCCGTGGGTGACGCAGCGTGTGCCCGTGTGCGGCAG
Seq C2 exon
CTGAAGCAGATGAGGGAGCTGCAGCAGGAGCAGGAAGTGCTGCTGCAGGGTCTGGAGATGATGGCACGGGGCCGGGAGTGGTACCAGCAGCAGCTGCAGCGCCTGCAGGAGCGCCAGCACCGCCTGGGCCAGAGCAGGGCCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047807:ENSBTAT00000063271:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=0.490
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=10.5)
A:
NA
C2:
PF114143=Suppressor_APC=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTGCAGGGCCCAG
R:
GAGCTGGCCCTGCTCTGG
Band lengths:
254-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development