HsaINT1040878 @ hg38
Intron Retention
Gene
ENSG00000186193 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr9:137065522-137066374:-
Coord C1 exon
chr9:137066262-137066374
Coord A exon
chr9:137065669-137066261
Coord C2 exon
chr9:137065522-137065668
Length
593 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGTAAATGCACGTATTGCAGCTG
3' ss Score
5.27
Exon sequences
Seq C1 exon
GTGCAGTGGCGTGCAGGGCCCTGGAGGCGGACTCAGGGGATGCCCGGCGGGCTCCCCGTGCCCGAGGGGAACGTCGGAGGCACACCATCGCCAGCGGCGTGGACTGCGGCCTG
Seq A exon
GTGAGCAGGGACTGGGGCTCTGTGGGGCTCTCCATCTTGCCTGGAGGCTGGAGGCCGGGATGGGAGCAGGGGGGCCTTGAGCCTGGGGGAGTCCATGGCGGAAGTACAGTCAGCTCTGGACATCTCTCTCCCTACCTGGGCTTGACTCCCCTGGAGGGATGGCCCAGGGTCAGGCAGAGGGAGGTCAAGAGGTCGTTTAGGGCAGCTATGGTGGCTGCCCAGCCCGCCTCACGAGGTTGCTGCTGCAAGCCAGTCTGGCTTCCCAGCTGTGTGCTCACCACAGGCAGACTTCGGGAGGGTGGGCTCAGCTGAAGGGTCCGTCACCCCTCCCCCAGGGAAGCCTGAGTGGAGGGGCTAAGAAAGGCCAAGACCCCTCAGCAGGAGGAACGGGGCTCCTGCTCCAAATGGGCCTATGGGGCTCACACATGCAGGTGTCAGCAGAAGCGTGCGTCCGTGGGTGTTTGCAAACGTGTACACGTGCTGCTGCATTTGTGTCTGTGGCTCTGGTGCCCACCCACAGGTGAGCTCATGCATGTGTGGACGTGTGCGTGCTCACTGGGGCCAGGCATTCCATGTAAATGCACGTATTGCAG
Seq C2 exon
CTGAAGCAGATGAAGGAGCTGGAGCAGGAGAAGGAGGTGCTGCTGCAGGGTTTGGAGATGATGGCGCGGGGCCGCGACTGGTACCAGCAGCAGCTGCAACGAGTGCAGGAGCGCCAGCGCCGCCTGGGCCAGAGCAGAGCCAGCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186193:ENST00000409687:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=10.5)
A:
NA
C2:
PF114143=Suppressor_APC=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGGACTCAGGGGATG
R:
GCTCTGCTCTGGCCCAGG
Band lengths:
230-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains