GgaINT0125012 @ galGal4
Intron Retention
Gene
ENSGALG00000009060 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr17:382695-386810:+
Coord C1 exon
chr17:382695-382828
Coord A exon
chr17:382829-386663
Coord C2 exon
chr17:386664-386810
Length
3835 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTCTGCACTCTGTCCTGCAGCTG
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTACTGATGTTAAGTCTGCTGGGCAGTCCCAGGGAGATGGTGGCCATGCAGGCCCTGGGGACGTTCGGAGACATCAGAGGGGGCGTGCAGAACACCGGAGACACACTATTGCCAACGGTGTGGACTTTGGCATG
Seq A exon
GTAAGAGAACAGCCCTATCATGGGCTACTGCCCCAAGTGAGGATATTGCAGAGGTCCCTCACTGCTGATACGAGCACTGTGGGCTATTGCTCTCTCCTGCCCACTTTGCACACGGGAGCTGTAGGATCTTTGGATGTCAGGAAGATCCTGGTGTTTCTTTCTGTTACAAAGCTTTGTTAATGTACGTGATGGCCTTGCAGTTATTTCCAAGGTATTTTGCTTCTTGAAATGTGCGGGGGAAGGAGGAGGTATATATTTCCAAGAGCCAGATCAGTCAATGGAGTTTGACTGCACACATGCCAACACCCCCATGGGCAAAAGTTTGGGCCAGGAAGGGCAAAAGTTTACCTTACAGTGTTAGGAGGAGGCCCCAGTGCTGCAATGGTCTCCGTAGGTCAGTCTCTGGGCCTTTCAAGCACTCCAGCAGAAGTCACCTATACACTGTGCTGGTGGTGCTGAGGCCTGCTGTGCTGCAGCCTGAGGACCCTGAGCAGCCAGAGCCAGCCCTGCAGGCTTCCTTTCCGCTAGAACATGGACAGAGCACGAGGAAAGGGCCTCTTGCTGTGACCTCTGCTAGATGATGTCAGTCAGGGCTCTAGCATGCTGATCCTCATGGCTCCTGAGAGATTTTTTTGCAGAGAAATCTGAGCTGAATTTGGCTGGGAAGCCTGGAACCGAGTGATCTGCTCCTCTCTCTGTTGCTAAGTGGAGAGGTTTAGATCAGGTTACCCAAACCAAGGGATCTGTGCTGCTCCCAAGTGGAATGCAGAAGCTGACTGGGCATATTGCCCACAAGCTCAAGCAAAATTTGACTGGGAAGAGAGCCAGGACCTCGTCTGTAGGATGAGTGATCGTCCAACCTTCCTTGCTTTGTCTCACGGCTCAGGAGCTGCTGGCAAAACTGCTACTATCACTCTGCACTTCCCCTTCTCGCACCCTGGTGTCACTCACTGCCTGCTCTGGGCCAGCCAGCAGGCTGCGTGGGCTGTCCTTGTGCAGCATCGATGGCAGCATCTCACTGGCTTTGGGAAATACAGCATACTGTTTCCTGGCCTGGCCTGACCCGCCTGGGAAGGGTTGGTTTATGCACGTGTGAGAAGAGGTTCTGCTGGGCTTGCAGCAATGCAAAGGGCTGGTTCTCTCTTTTCCTCTCAGTCTCAGAGGGTCTCTGCTGAGGGGTGCTGACAAGAGGCAGTAGCTGTGGATGTGCCTGCCTGGGGTTGGGCTCCCTCTGCTCCTCAGGTTTTGGTGGCTGCCTGGGGAGGAGATGCCCCCCTCTTCTGGCAGGGCTCCTGTGTGTTCATGCAGCTCCAAGCCGGAGTGCAGCAGCGGTGGCAGTGCTCCCTCAGCTCCACACCCTTCCTGGTGCTGGTGAGGAAGGGCTTTGGTGGCCAAGGTGTCTTGCTGGAAGCTGCTGTTTGTTCCTGGGACTGCCACACTTGCTGTAGCTTTGGGCTAGTGTTGCTCTTACTTTTGTTTCATTACACTGCTTATTTGCCATGGGGGATACAGGAGGGACATTTCTTCCCTCCATCCCCTTTATATCCAAGTGCTGCACTGCCTTTGCACTCCTCCCTGAGATGAGATGCCTGGCACTATCCTGTGGGGGTGAGAAGCCTTCCCCAGCACCAGGGCACAAACGTTTGGGTGCCAGTTCCAGATTTGAGTATGCAGAGACAGTTGGAGCAGGTTTCAATCCAGCAAGGATTGAGTCTGTGTGCAGGACTGTGCTCTTGCCTGGCTATGCTTCCATCTTCTCTGGAGCTGGGAAGATGCTGGGCCCTGCAGAGAGAGGGCACACAGCTGCAATTAGGCTAATTTGCCCCATTTCCAGAGGGGTGGGGGTGGAAGGGACTGATGTCCATTTGGCAGCCCATGAGTACAATAGGACCTGTTAATCTTGATCAGCAAGGCAGAGGTTTTGGGGCTGTGCTGCAGCCTAGGGATGCTTTAAGATGAACAGCTGGTGTCTGCTCAGATGGTGGGTTTTTTTGTTTTTTTTTCAATGAGTCCATCGATTGGCCCCATTTCCCCATGGCCTGAGGGTAGTTGGGATGAGGCCTGTGAGAAGCTGAGCACTTTAATTTGTGGGCAGCCCAGGGCATGGTACTCTCCCCTCCCCTTCTACCACAGGCAGCACCAACCAAAACCTACTGTGTCTACTCCACCTCCCTGTCCTGGCCCTGTCTGAGACGCTGTATCCCATCCCACTGCCCCTACAGAGATCCCACCTGCTGTCCCTGCAGCCAGTAGAACTGCTGATGTCCCCCTGCTCAGTGTGTTGCTGCCCCTTCCTTCTATCTCCACGCTGACCAGCAAGTCAGGTGGGATCAGGATGAGACAGGCAGTTGCAGGCTGCAGCCAGAGCTGGATGGGGGTCCTTGCCACATACAGCACCTTCTTCATGCCCCTCAGCAACAGCCTGTGCAGTACCAAGGCTCTGCGGTTCTTCCTGTGGGTATGTTCCTCTGTCTGTCTGAGCCTGTGTGTGTGTTGCTGCTGTATTGCAAACAGCATTTTCAGGAGCAGAGGGAGAAATAACAGCTGTGGTGTTGTGGGGTGGCTGGTGTGCAACAGCTGTGGGGCTCCTGGTGCGGAGATGGGGACGGGGAAGTGCTGCCATCCTGAAGGAACGTTTGGTACATCCTTGTCTGTCTGCTGCAGGAGGCTCTGCCTGGGGTCACTTCTAAGCTGAGTCTCCCTCCAGATGCTCTCCAGACAGCAGGAGAGGTTCCAGGCTCACCGCTTGGCTTTTCCTTTGGGCATGGGGAGAACTGCCTGCCCTCTGTGGGGCGGCTCATGGTGCCCAGTCTGTGCCACAGGCAGCGGAGCTCAGGTGGTATCGTGGCAGAGAGGGCAGGTGGCTGTTTGCTGTGGGGAGAGCTGGGACTGCTCCTGGCCTCTTTGCCTCAGAGCAGCTGCAAGGATGTGAGCAGGGGGCACAGCTCTGGCGGAGCAGGTTTTGGGGAAGGCACAGGTGGGTGAGGGCTCATGGTTTGCTGTGCTGAGGCTGCTCTGTTCCACAGGGAGCAGACTCTCCTCTTGCCAGCTCTGTGACTTCTTGGTGGCAGTGCAGTGACAAGGGGCCTGTGGAGGGGAGGTGCTGGTGAGGACCTGAGGACAAGAGCTCCAGGTGCTCTTGTAGCCTCCCCCTGACACCTGAACATACCTAATCCCTCTGCAGATGGCTCTAGAGCTCAAACCTGAAGGCTAAGCAGAACCAGTCAGCAGAAAGGTATGCCTTGCTCAGCTCAGAGATGCCTCGGGCAGTGAAGCGAAGGGGAAAGCAGAGGGCTGAGTAAGCAGGCTGTGGGTTTTGCCCAGGCTTCTGGTCTGTGCGGGTGACTTGGCTGCTTCCTGACAGCATTGTGAGTTGCTGCTGCTTTTGGGGGTTGCAGCCTGGAGAGGTTGCAGGCCCTGTTCTTAGCATGTGCTCAGATAAATGACAAAGCAGAGAAACCTGCTTCTGTAGTGAGAGCTGATGGGGAGCAGGCCTGGTTCCATGGATGGGAGAACAGAGATGACCTGATGGCCCTTCGGTTGCTGCTGTTGCTCTCCCAAATTGGAGAACCTACCCCAAACAGGGATCAACCAGTGGCTATCACCCAACTTCTCTGCAGCTTGCTGTGGCAAGAGGGGCTGCCACAGCTGCCTGTAACCAAATTCCTCTCTGCCTCATGAAGAAGCCAGATCCTTGGGCTGGGCTGCGGGAAGGGGCCTGTGTTACATTGCTCCTAGGGGCCTTCAGATGGGAGCTGACCAGGCAGTGCTTCTCTGAGCATTTGGCTTGGACCTGGATAAGTAGAGAGTAACATGTCTGCACTCTGTCCTGCAG
Seq C2 exon
CTGAAGCATATGAAGGAGCTGGAACAGGAGAAGGATTTCCTGCTTCAGGGTCTGGAGATGGTTGAGCGTGCCCGTGAGTGGTACCACCAGCACATCCACTTCATGCAAGAACGCCAGAGGCTCTTGGGGAAAAACAAAACCAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060:ENSGALT00000014746:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=8.9)
A:
NA
C2:
PF114143=Suppressor_APC=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]