MmuINT0001917 @ mm10
Intron Retention
Gene
ENSMUSG00000026955 | Sapcd2
Description
suppressor APC domain containing 2 [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25374952-25375831:+
Coord C1 exon
chr2:25374952-25375064
Coord A exon
chr2:25375065-25375684
Coord C2 exon
chr2:25375685-25375831
Length
620 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGCTCACGTGTGTGTTATAGTTG
3' ss Score
7.13
Exon sequences
Seq C1 exon
GTGCAGCAGCCTGTAAGACCCTGGGCAAGGGCACAGGTGAAGCCCGGCAGGCTCCACGGGCCCGAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGTGGACTGCAGCCTG
Seq A exon
GTAAGAGGGGCCAGGACTCTGAGGGACTCTGTGTATCCAGAAGGTTGGAAACCAGGGAGATCCCATGGGCCTGGTTACTTGGGGAATCCCTGTAGGAGAACTGGTCAGCTTTTTCCCTTCTTGGGCTTAAGGGAAGACAGACAAAGTCAGGCACAGGGAGAAGAGGCTCCTTAGAGATGCCTGGAGACAGAGTGTGGGACCCTGCTCTGCCTACCAGGTAGGCTCACCTCTGCAGGCCAGCTTAGTGCACAAAGAGTATAATTACTTTAAGCTAGAGTGCTGAGTCTGTTCAGTCACTCCGCTGCCCTGGGAAGCCTCAGTAGAGGGGCTGAGAGGCCAGTCTCCAGTATCACCATCATCCAAAGAGGAGAAACTAGGCTATGTTCTCCAAGGCATACGTTGGAACCTTCCCTGGATAAGCTGGTGCTTTCCGTCGTGGGTGCATTGGCAGACTACACAGGTGCTGATGTCATTCATTGTGTCTGTGTGCTAGACTGCCTGTGGACAGGTCTCAGCTCCCACACCTGCAGCTCCTGGAGCACAAAGGTATGTGCAGGTGTGCATAGAGCCAGTCTGCTTGCTGTCATGAGTACATTTCCATGCTCACGTGTGTGTTATAG
Seq C2 exon
TTGAAGCAGATGAAGGAGTTAGACCAGGAACAGGAGGTGCTTCTGCAGGGCCTGGAGATGATGGCACGGGGCCGAGACTGGTACCAGCAGCAGCTGCAGCGTGTGCAGGAACGTCAGCGCCGCCTGAGCCAGAGCAGAGCTGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955:ENSMUST00000114293:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=NA C2=0.367
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=10.5)
A:
NA
C2:
PF114143=Suppressor_APC=FE(57.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCAGCCTGTAAGACC
R:
AGCTCTGCTCTGGCTCAGG
Band lengths:
254-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types