MmuEX6099491 @ mm10
Exon Skipping
Gene
ENSMUSG00000026955 | Sapcd2
Description
suppressor APC domain containing 2 [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25374952-25376075:+
Coord C1 exon
chr2:25374952-25375064
Coord A exon
chr2:25375685-25375831
Coord C2 exon
chr2:25375968-25376075
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCTCACGTGTGTGTTATAGTTG
3' ss Score
7.13
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTGCAGCAGCCTGTAAGACCCTGGGCAAGGGCACAGGTGAAGCCCGGCAGGCTCCACGGGCCCGAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGTGGACTGCAGCCTG
Seq A exon
TTGAAGCAGATGAAGGAGTTAGACCAGGAACAGGAGGTGCTTCTGCAGGGCCTGGAGATGATGGCACGGGGCCGAGACTGGTACCAGCAGCAGCTGCAGCGTGTGCAGGAACGTCAGCGCCGCCTGAGCCAGAGCAGAGCTGCTGCA
Seq C2 exon
GACTTTGGGGCTGAAGGAAGCCCCCGCCCTCTGGGGAGGTTGCTGCCCAAAGTACAGGAGGTGGCCCGGTGCCTGGGGGAGCTGTTGACTGCAGCCTGCTCTGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955-'4-9,'4-5,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.367 C2=0.399
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=10.5)
A:
PF114143=Suppressor_APC=FE(57.1=100)
C2:
PF114143=Suppressor_APC=PD(34.5=80.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCAGCCTGTAAGACC
R:
GCAGGCTGCAGTCAACAG
Band lengths:
212-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types