GgaEX1050811 @ galGal3
Exon Skipping
Gene
ENSGALG00000009060 | C9orf140
Description
NA
Coordinates
chr17:763701-769318:+
Coord C1 exon
chr17:763701-763864
Coord A exon
chr17:768403-768549
Coord C2 exon
chr17:769217-769318
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTCTGCACTCTGTCCTGCAGCTG
3' ss Score
9.42
5' ss Seq
ACTGTGANN
5' ss Score
0
Exon sequences
Seq C1 exon
GTGGTGCCCTTATGCTTTCTTCTGTTGCAGGTACTGATGTTAAGTCTGCTGGGCAGTCCCAGGGAGATGGTGGCCATGCAGGCCCTGGGGACGTTCGGAGACATCAGAGGGGGCGTGCAGAACACCGGAGACACACTATTGCCAACGGTGTGGACTTTGGCATG
Seq A exon
CTGAAGCATATGAAGGAGCTGGAACAGGAGAAGGATTTCCTGCTTCAGGGTCTGGAGATGGTTGAGCGTGCCCGTGAGTGGTACCACCAGCACATCCACTTCATGCAAGAACGCCAGAGGCTCTTGGGGAAAAACAAAACCAGCACT
Seq C2 exon
GACTTCCTCCCTGATGGCAGCCAGAGCCACCTGGGGCACCTGATCCCGAAGCTGCAGGAGGTGAACCGCTGCCTGGGTGAGCTCCTGTCAGCTGTAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.709 A=0.224 C2=0.412
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=7.3)
A:
PF114143=Suppressor_APC=FE(57.1=100)
C2:
PF114143=Suppressor_APC=PD(34.5=85.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTATGCTTTCTTCTGTTGC
R:
CCTACAGCTGACAGGAGCTCA
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]