GgaEX1050811 @ galGal4
Exon Skipping
Gene
ENSGALG00000009060 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr17:373727-387684:+
Coord C1 exon
chr17:373727-378041
Coord A exon
chr17:386664-386810
Coord C2 exon
chr17:387583-387684
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTCTGCACTCTGTCCTGCAGCTG
3' ss Score
9.42
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CGGCTCCCGCCCGTCCCCTCCGGGGCCGTCCCCCGCCGGTACCGAGGGGCTGCCCAGGGCCTTCCTGCAGAGCCTGCGCACCCTCTTCGACATCCTGGACGACCGGCGGCGGGGGTACGTGCACCTCCGGGAGATCGAGTCCCGCTGGCAGGGTGCGGAGGCCCGCGAGCTGCCCGCCGGCGTGTTGGACGGGCTGCGGCGGGCGGCGCCGCCCAGCGGGTATCTCACCTTCGAGCGCTTCGTCCTGGGGCTGCGCGCCGCGCTGCCCGGCGCCGACGGCGGAGTCCCGGGTAAGGGCAGAGCCCCGGGGCGCGGGCGCGGGGAGCCGCGGGACAGGGAGCGGGACAAGGAGCGGGACAAGGAACGGGGCCGCGGCACCGCCGTCAGCGCCTCGCGGAGCCTGGAGAAGCTGCCGAGCCCGCACGGCAACGAGGAGCGGCGCGGGCAGAACGGCGGACACCGCGAGCCGGAGCCGGGCCAGGGGCAGCCCCGCGGCAGAG
Seq A exon
CTGAAGCATATGAAGGAGCTGGAACAGGAGAAGGATTTCCTGCTTCAGGGTCTGGAGATGGTTGAGCGTGCCCGTGAGTGGTACCACCAGCACATCCACTTCATGCAAGAACGCCAGAGGCTCTTGGGGAAAAACAAAACCAGCACT
Seq C2 exon
GACTTCCTCCCTGATGGCAGCCAGAGCCACCTGGGGCACCTGATCCCGAAGCTGCAGGAGGTGAACCGCTGCCTGGGTGAGCTCCTGTCAGCTGTAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.306 C2=0.441
Domain overlap (PFAM):
C1:
NA
A:
PF114143=Suppressor_APC=FE(57.1=100)
C2:
PF114143=Suppressor_APC=PD(34.5=85.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGCGGGACAAGGAAC
R:
CCTACAGCTGACAGGAGCTCA
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]