RnoEX0077987 @ rn6
Exon Skipping
Gene
ENSRNOG00000013069 | Sapcd2
Description
suppressor APC domain containing 2 [Source:RGD Symbol;Acc:1590629]
Coordinates
chr3:2594766-2595882:+
Coord C1 exon
chr3:2594766-2594878
Coord A exon
chr3:2595484-2595630
Coord C2 exon
chr3:2595775-2595882
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATGTGCGCGTGTGTTACAGTTG
3' ss Score
8.9
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTACAACAGCCTGCAAGACCCTGGACTTGGGCACAGGTGAAGCCCGGCAGACTCCGAGGGCCCGAGGCGAGCGTCGAAGGCATACCATTACCAACGGTGTGGACTGCAGCCTG
Seq A exon
TTGAAGCAAATGAAGGAATTAGACCAGGAACAGGAGGTGCTGCTGCAGGGTCTGGAGATGATAGCCCGGGGCCGAGAGTGGTACCAGCAGCAGCTGCAACGTGTACAGGAACGTCAGCGCCGCCTGAGCCAGAGCAGAGCTGCCGCC
Seq C2 exon
GACCTTGGGGCTGAAGGGAGCCCCCGCCCTCTGGGGAGGCTGCTGCCCAAAGTACAGGAGGTAGCCCGGTGCCTGGGGGAGCTGTTGACAGCAGCCTGTTCTGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013069-'3-4,'3-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.408 C2=0.444
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=10.5)
A:
PF114143=Suppressor_APC=FE(57.1=100)
C2:
PF114143=Suppressor_APC=PD(34.5=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACAGCCTGCAAGACCC
R:
CAGAACAGGCTGCTGTCAACA
Band lengths:
216-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]