BtaEX6047585 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047807 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr11:106171291-106172497:+
Coord C1 exon
chr11:106171291-106171403
Coord A exon
chr11:106171997-106172143
Coord C2 exon
chr11:106172390-106172497
Length
147 bp
Sequences
Splice sites
3' ss Seq
CGTGTGCCCGTGTGCGGCAGCTG
3' ss Score
6.65
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GAGCAGTGACCTGCAGGGCCCAGGAACTCGGCACGGGGGCCGCCCACTGGGGGCCCCGTGCCCGAGGGGAACGGCGGAGGCACACCATCACCAACGGCGTGGACTGCGCCCTG
Seq A exon
CTGAAGCAGATGAGGGAGCTGCAGCAGGAGCAGGAAGTGCTGCTGCAGGGTCTGGAGATGATGGCACGGGGCCGGGAGTGGTACCAGCAGCAGCTGCAGCGCCTGCAGGAGCGCCAGCACCGCCTGGGCCAGAGCAGGGCCAGCTCG
Seq C2 exon
GACCTCGGGGCTGAGGGCAGCCCCCGCCTGCTGGGGCAGCTGCTGCCCAAGGTGCAGGAGGTGGCCCGGTGCCTGGGGGAGCTTCTGGCTGCGGCCTGTGCTACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047807-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=0.490 C2=0.222
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PU(4.8=10.5)
A:
PF114143=Suppressor_APC=FE(57.1=100)
C2:
PF114143=Suppressor_APC=PD(34.5=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGGCCCAGGAACTC
R:
CTGGTAGCACAGGCCGCA
Band lengths:
210-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]