BtaINT0128628 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004510 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr11:104611833-104615835:-
Coord C1 exon
chr11:104615745-104615835
Coord A exon
chr11:104611975-104615744
Coord C2 exon
chr11:104611833-104611974
Length
3770 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
ACCCCTCTCTGTCACCACAGGCG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GAATGATGCTGGGCGGTGGCTGCGGGCAGCAGCTGGCTTATTGGATTGTCCACGGGCGCCCAGAGAAGGACATGCACAGCTATGACATCAG
Seq A exon
GCGAGTGCCCATGGGGCTGGTGGGTGGGCAGTGGCTGCCCTAGAATGGGGCGGCGGAGGTGATGGTTTGTCACTAAGTCGTGTCCAACTCTTGTGACCCCGTGGACTGTAGCCCTCCAGGTTCCTCTGTCCATGGGATTCTCCAGGGAAGAATATTGGAGCGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCGACCCAGGGATCGAACCTGGGTCTCCTGCATTGCAGGCAGATTCTTTACCGACTGAGCTACAAGGGAAGCTGCTGGGATGGGGTGGGGTGGGGTGAACATCCCGGGCTCTTTAGAAAGGAGCCTTCCCTGAAATCCAGAGGGCGTCTTGGAAGAGGTGGCAGTAAGCAAAGAAGGAAGAGGCCAGCTGGGGGAGGGGGCAGTGCTGCAGGGTGCCTGGGTTTGGCAAATCCACCGCCCTCTACAGTTTCCAGGACCTCTCGTCCCAGTGTCCTGCCCGACCTGTCCGACGGCTCTGGGGTCAGCAGTGGGATCCCATCGTCCCACTTTGCAGATGGGGAGACTGAGGCCGGGGGAGCAGGCTGCCCGGGGATGGGGCTGAGCCAGGGTGGTCACTGCTGGGATGTGAGCACGTCTGGGAGGCAGGCAGCCCCGAGTGAGACGTTGGCCGCACACTTCACTCACGGGGAGACTGAAATAAATCGGACCCCGTGCAAGCCCGTCCCTCTGTAACGGGGGTGTGAGGCGCTTGCTGGGAGCAGTGAGCGTGTCTGAGTAGGCGGAATGCTCAGCATCGGGTCTGCGCGTGAAACACTAAAGAAAGCTGAGCTGAGGCCAGTGTGCGTGCGGGGCTGCTATCAGAGCCGGGAGGCGTCCGGCTTGCCCACCGCCCTCTGTGAGCTGGAGCAGTGAGGCCCCGAGGCAGGGTCGGTGGGGCCAGGCTTCCGCTCCTCGGGTGGCAGTTCTGTGGCCTGAGCACTGCAGAGGGCAGAGGAGACAGCGGCTTGGAGAGGCCTCTGTGGGGGCCCAGCCCGTGGCGCTGTGATGGCTCTGGGCAGATGGGCTCCCTGGAGAGACCCCGGCTGCCCGGCAGGGCTGGAGGTGGTGGGGGTGGTGGAGACCACTCTGGTTCAGCTCAGCGCACCCTGGCTCCTCTTCTAACCTCGCCCCGTCCTGGCCTGATGGGGACTTTGTGTTCACAGGGGTGTGTCCGCCACCCACACAGACAGGCGGGCATACCCTGAGATCCCCTCCCCGTGGCGCCTGGCACAGCGCGGGCTGCTGCCTCGGAGACAGTCTGGGGCTGTGCCCACGTGCTCTCCCAAGAGAGGAATGTTCCAGAGATGATAAAGCTGCCCGGAGCCTCAGGGATGGGCCAGTCCCAGCCCCTCCGGCTACAAACAGCAGAGCAGAGGAGCCCTCACGGGAGGCGGCTCGCCTGAAGTCACCCGGCGCTGGAGCCACAGCCGCCCAGCTCCAGGCCTGCAGGCTGTCTGCCATCTCCCCTCCCTCAGGGGTGAGGCCTCCGCCCTGGGAACCGATGGACCAGGGTGCAGGCTGGGCCTCACCAACGGCCTCCCGCCTCCAGGGCTGGTGGACGCCCCCCTCAGGGGCTCTGGGCCTCTCTCCCTCCCTGCCTCCTCTCACAAGCGAGACATCAGTGGGAGCGTCTTGGGGGCCCCTTCATGGGTGCGCACAGAGCCGCCGCCCCTGCCCCGGCCAGCTGGGACCTCGGGTCACAGGTTGGAGGGCAGAGGGTCCCCGGAGGGAGACCCCCAGAGCTGTGATCTCGGGGCTGGGGGCTGGTCCGCCCACTCTTCCGGCCCGGACAGTGTGCCCCAGGGGAGGACCAGCTGAAGACGTCCGACCCGAGCAGTCCCTGACGTGGGACTTGGTGCCCACCCAGCACCACGCCCCGTCCCCACACACATATTGGGCGGCCGCCACCCCCAGGCCAGCCTCCGGCATGGCACCCGGGGCCTCTCAGCACTAATAAGCGGGGGTGGAGACGGGCCGCGGGGGCGGCGAGGCGGGGGTAGAGGGTTCTGTGCGGGGAGCGGGGGGCCGCGCTCGTCCCTGTGCTCACACATGCAGGGGGTTGGAGGGCAAGCTCGGGCAGGGAGGTGACTGGGGGTCACCTGTGGGGGAGGCTCCCAGGGTAGGCCCTCCCTGTTAGCTGTGTGGCCAGTTCCCCTCTCTGACCTGGGTCTCTCCATCTGTGAAATGGGGACGAGGGTCCCCTCTCCCAGCGGAGGCGTCTGAGGTTCACGGTGGGGATGTGCCCCCCACCCCCGGGGCCTAGCCTAGGCGGGGCCCAGAGCGCAGGCCGCTGGTTTGAGGAGAGTCGCTGGGGTCCTGGCAGCCAGGAAAGGAGGAGTCGCTCCTTACTACATCGGGAGGGCGGCTGGACGCTGGTGCCCGGCTGCAGGCCCCTCTGCCCGCCTGCATGCAGGTGGGAAATGGCAGCCTGGGCTATGCGGGCCCCGGGGAGGGCCCCTCTTCCTGCTGACCCCTGCTGGTGCTCTGGCTCAGCAGAGTGCCTGCTCCTGACACCCACAGGCGTGCACAGGTGTGAGCAGAAGGCCGGTGGGGGCTGGTCCAGATGGGCAGGATCTGTCCGTCTGGGGATCACCCAGCCCTGCCCCAGGCCCGTCCCCCTCCTCGGTCCCGGCCGCGCCTGGGCACCCCCCAGACCCCCGTCCATGAACCGCCTTCATGCTGAAGCTCCTGGCTCAGTACAGGCCGGTCTCCTGTCCCGTGCAAGGAGCCAAACCAGGGCCCCACACGTGAGGCCGCTCTGAGGACCAGCCCTGGGTTCTCGCAGCCGGCACCCAGCCCCGCCCTGGAAGGGAGCCCCTTACGCGGTAGCAGCCGCTGTGAATGGAGTCGGCGTCAGAACCCTCACGAGTGTGGTCCCGCTGCCCCGCCCAGATTGGGCACCGTGCAGACGAGAACCACGTGAGAACTGAGAGTTGGCAGGCACGACGAGGCCCGGGCGGGGTCCCTGAGGACAGCAGCCGGTGGGGACGCAGCCGGGGGGGCAGTGGTCCTGGAGGACAAGCGAGATGCCCACAGGTGGGGGAAAGGCGGGGGCTGGGGGTGTTGAGCTGGGCACCTGAGGGGTGGGCTGTGCCTGGGGAGGGCAGCGGGGCCCAGCGGGGCAGGCAGCCCAGCGGATGTGCTCGGTTTGGCTCGGGCGGCCCTGCAGTCCAAGGAGGCCAGGCAGAAGGGCCGTCGGGTGGCCCGGCCATCGCGCCCGTGAGCAGGCTGGGGAGGCGCCTCTGAGCTCGGTGGGAAACGGCGAAGGGCCCGTAGGTGGAGCTGGACGCCCCTGAGGGTGACGTGATCCCCCCAGTGGCCCGGGGGGATCCTGCGGGGATCCTGGCCACAGAGTCCCCGGGTGCAGGGTCTGCAGACACAGCTAGGGTCCCCAGACAAGCCTCCATTCCTCTCGGGGGTTTCTCATCTTCACCCCTTGTTTCTGCCGAGGGGGCCCCATGGAGAAAGAGGCTGTCACACCTGCTGACCCCAGACTCTGAAGACCCCAATGTTAACTTCCACCAGAAGGTCCGGGCTTCTGGGTGGCTCCCCAGTAGGACGAGGGGCACGGCTTGCCCCCAGCACGACCCCAGCCTGAGGCCCTGTGCCCACAGTCCCTGTGCCTGACGGCTGTGGGGGCTGCAGAGGAGGCAGCTGAGCTCCCCAAGGCTTGGGGGTGCCCGAGGCCCCTTTGGGGAGGACTCTGGGAGAGGACGAGGGTCCCCCAGGCGGTGACGCACCCCTCTCTGTCACCACAG
Seq C2 exon
GCGCTTCCACCGCTCGCTCACGGGCCACGGCCGCTGGATCCGGGAGCGCAGCCACGAGGCCTACGCCAAGAACTACTCCGTCGTCTTCCCCCACGACGAGCCGCTGGCAGGACGCAACATGCGGACGGGCCCCCTGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004510:ENSBTAT00000005925:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(3.9=45.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development