HsaINT0144937 @ hg38
Intron Retention
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr9:133708287-133712709:-
Coord C1 exon
chr9:133712619-133712709
Coord A exon
chr9:133708429-133712618
Coord C2 exon
chr9:133708287-133708428
Length
4190 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CGTCCCCCTGTCTGCGGCAGGCG
3' ss Score
8.02
Exon sequences
Seq C1 exon
GAATGATGCTGGGTGGTGGCTGTGGGCAGGAGCTGGCCCACTGGATCATCCATGGGCGCCCGGAGAAGGACATGCATGGCTATGACATCAG
Seq A exon
GTAAGTGCCCATTGGGACCTAAGGGCAGGGCCCGCCACTCAGGACAGGTGGCGTGGGGTAAACAGCGAGGGCTACTGAGAAAGGAGCCTTGCCTGAAATCCAGGTGGCTTCCTGGAAGGGGCAGCAGTGAGGGAGGAAGGCCACCAGCAGAAGGTGGGCAGTGCTGAGGGGGTGGCTGGGGGGCAGGTCCACGCCCCTTTACAGCTTTGAAGATCTCTTGTCCCAGGGTCCTGCCTGAGCCCCTGGACAGCTCTGGAGTCATCAGTGGGATGGCATCACCCCACCTCACAGATGGGGAGACTGAGGCCTGGGGGCAGGAGGGAGCGGGGCTGAGCTGGGAAAACTGTGCTGAGTGTGTATGCCGCGGCTTGCAGCCAGGCAGCCCCGGCTGTCCCGTTCAATCGTACACTGACAAAGCGGCCAGGAATGAGACCCAGTGCAAGCCACTTCCTCGTCTCTAATGCAGGGTGATGGGGAGGGGCTGTGGAGGTTCTGGGAGCAGGGAGGGCATTTGTACTGGTGAGGCACCCAGCATGGGGTCTGCACATGGAAACGCTAAGTCATCCCCAGCCGAGGCATGGACTGGGGTGCTGGTGGCCAGAGCCGGTGACGGCAGCCTATCCCGATGGCCTTCTGCCAGTCAGGGCCATCTCTTGCAGAGCACAGGACAGTGGTGCAGGCGCTCCCCGGCAAGGGGGGAGGCTCCTCCTGTGTCTCGTCCTCATGGCGGTGGCCTCTCCGACCCACACAGCAGGGCCTGTGGCCCGGGCCACTCCCCGTGCGTTGTGGGGTGGCTGTCGAGGCAGGACGGCTTGGAGGGAGCCCGGCCTCCGGGTCTCTCCAGCCCACTCTGCTCCCGGCTGCTGCTGCTGGTGGACAGCCTCCCTGGGGAGGCAGTAGGTGGGTGGGCTCCGGAGGGAGAAGGCCTGGCTCAGCTCGGTGCGCCCCTCGCCTCTGCTGACCTAGTCCTTTCCTGGCCTGATGAGGACATTACGCCCACTGTGGAGAAGAATGTCTGACCCCACGGAGACAGTGACACTGAGGCCCCCCAGCTGCCACCCCTCCATGGCACCCGACACAGTGAAGCCTCCTCTGGCTGACTCAGAGCCCGTCTGGGCCTGCGCCCCTGCACTCTCCCAAGCGAGGAATGTCCCGGAAATGATAAAACTGTAAAGGACTTCAAGGAAGGGCCAATTCAGGCCCCTCCTGCTGCAAACAGCAAAATGGAGGTGACTTGCCTGAAGTCACCCGGCTTTTGAACCAGAGCCAGGTAGGGACCCAGCTCCCTCCCCAGGAGGGACAGTCTTCATGCCCTGGCCTCCCTTGGGGATTCCAGCTCTGGAACCCACCAACCAGGGTTCTGTGTGGCCTCTCTGTGCCTCTGTATCCTCGGCTGCAAAATGGAGCTGCCCAGCCTGCCCAGCTCCTGACCTGGGGCCTAGTCCCGCACTCAGCAGACAGGATGTTTGCTCATGGGCTGGCAGAGGCCCTGAGGCGACCCCTGGCAAGTTGGGGGCAGGCCTGGGCCTCCCTCGGTCAGCTGTCTTCCTTCCATCACTGGGACTTTGGCGGGAGTGTGCCATGGGCTGCTCTGGGGCTGGGAGCCAAGGGCACAGGTGGGGAGCCCCTGAGAGCTGGAGTACAGCAGGAGGAGGAGCACCCACCCTGGAGTACAGCAGCAGGAGGAGCACCCACCCTGTTGGTCCCAGACCCCTGCCAAGCAGCCTGGCTGGTGGCACCCAGGGCACACAGGCTAATGCCGTCCTCAGCCCAGCCGTCACTGACGTGGGGCTTCCAAACCCCTTCAGTGTGCCAGAGTGGACGGCCGCCACCAGCAGGACCAGCCACCGGCCCCCAAGGGCTGTAGCACTAATGCAATGTTCTGCCACCTCGGGCCTGCGCCCGGGGACTGAGACAAGACACAGACCCTGAAGGAGAGAGACAGAGCGAGGAGAGGAAGGAGGTGCCTGAGAAAGTCGTTGAAAGACCCAGAAAAGAAAGTGAACAGAGAGCGTCGGCGCCAGAACGGAGCTCTCCCCTGCTCAGAGACTCCTGGTTGCTCCCCTCAGGCCAGAGCCAGAACACGCGTGGGTCGTCCTTCATCATACACATGGGAGACACGCACAGCGAGGGGGCGTCCCGGGAGACCAGGCAGCCTGAGCCGTCCCTGGGTGCGGGGCCTGTCTGGGCTCCGGGCTGCGCGTGAGGGTCCCAGGGCTGACCGGGCACCAGGGGGCTTCCAGGCCATGGCAGCCGCCCTGCGCGTGAGTTCCTTTTGAAATCAGATAAGAGGCTGTCTCTCCAGCCCCATATCTGTCAGCTGCATGGCCCTTGGTCAGTCGCTCCTGTTCTCTGAGCCTCAGTTTCGCCACCTGGAAAATGGGAACAATGTACCACCCTCTTGGAGCGCACTCGAGGCTCATGCGTGTGGACGCTTGGCCCAGTACCCAACAGAGGCAGAGCCAGAGTGTGGGCTGGGCTGTTTTTTCAGGGAAATTCCTTGGGGACCAGGTGAGCCAGGGAAGAGTTGCTCTTTATTTAAGTGAAAAGGGTGGTCTGGGCCGGCCTGGTCCCTCTGCCCACTTGCTCACAGGCCGAATTGGCAGCTGGGACTCTGTAGGTCACTCGCTGCTCCTGCCACCCGACGTGCACCTCACTGCTGCCCCCAAGAATCCTCCCAGACCTTCACTGGCTCCATCACCCCCTCCTTCAGCTCCTGGTCAGCATAGCCTGGCGCAGGTGTGGGCTGCCTTTGCCGTGGCCTTGCCGTGTGACTGTGAACACTTGTGAGACCCTTCCGAGCCTCAGTTTCCCCCTGCGTGAAAGAGTTAATCTTGGGTCCCATGCAGAAGGCAGCTCTGGGGACAAAGAGAGAGGGATTTCCTCCCACAGCAGCACTCAGCTCTGAGCCTGCACTGGAGCTGGGTGCCATAAGCGACAGCAGCTGTTAATGATAATATCATTAATAATAATCCTCACGTCTGCACCTCTACTCCCCACCCATCCAGATCAGAAAATTCTGCTTGCTAGAATTACGTGCAGACTAAGAATCAGCCCTGACAGGTGTCACTGAGGATAGAAACGCCTCTGATGTGGCTGCTGAGGCAGCCTTGAGTGATGAGTGAGGTTCTAGCAGGTGGAGCGTGAGGGGGAGGCGGGGTGCTGGGAAAGCCGGGGGCTGACAGGGAGGTTTGTGCGTGGGAGGCGGCTGCAGGGCCCTGATGCAGCTGGGCCCGGGTCTCACTCCAGCCAGCAGTTCCGCACTGTCGGATTCGGGACGGGTGGCTGGTCTGAGGAGACCAGGGAACAAGCCGCGGGGCACTGATTGCTCTGCCCACTCAGGGGCAGCAGAGGCCTAGGCCGCAGGTGCAGCCACAGAGCTCCGTAGCTCCATGAGAAATAGCATGGGGCCCGCCGGGTTCGTGCTGGACACCACCGGGGGCTGCCGTGGCCGCACACTGTGTCCCCAGCCTCGAAGGAACAAACCCAAAACTATTGCAGCCACATCATCTCCGGTCCCAGGCGCTGGATTGGGCAGCCGCTCCCCAGACACAGCTGGGATTTTCCCCCAGAGACTCTGTACCTCTTGGGTCCCTGGTCTGACCCACAGACGAGGCCCAGCTTTGGGATCACAGACTTGGGGAGGCCTGATGGGACAGGCGGCCACCCTTGCCCCCACTCCCCTGCTGGCGGGTGGAAAGGGGGGTTCCTTGATGAGGAGGGGGACACTGGTGTTCTGACGCATCACCAGGCTAAACTTCAAAGACCCTTCACATGGACCCTCCCCAGAGCATTCTGGGGATCTGAGCCCATCCCTCCCAGGGGCCGCTCCCTCCCCAGTCATGTAGGGGCACCCCAGGACTCCCCAGCACTGGAACCTAGGCAGCAGACAGCAATGTGTGGAGAGCGAGGCTGGAGTCCCATGTCCCTGTGGGGGATGAGAGCCTCAGCTGGGCCCTCTGTCCACAACGCCCACTCACTGAGGGCCACTGGGGTGGGGTGGCTCTGGGGGAGAAAGCTGAGTTCACCCAAGGGTGGGGCGAATGGAGAGTCAGGGGCCCGCTCAATGCTGAGCCACAAAGGGGACTCTGGTGCAGGGGACCGGGGTCCAGGCTTACCCTGGGTCCTAGGCTAGCCCTTCCCTGACGGGCCATCCCCAAAGCAGTGACCCGTCCCCCTGTCTGCGGCAG
Seq C2 exon
GCGCTTCCATCACTCGCTCACGGACCACCCCCGCTGGATCCGAGAGCGAAGCCATGAGTCCTACGCCAAGAACTACTCCGTCGTCTTCCCCCACGATGAGCCGCTGGCCGGGCGCAACATGAGGAGAGACCCGCTGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453:ENST00000371872:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(3.9=45.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development