MmuINT0138801 @ mm10
Intron Retention
Gene
ENSMUSG00000009614 | Sardh
Description
sarcosine dehydrogenase [Source:MGI Symbol;Acc:MGI:2183102]
Coordinates
chr2:27228244-27230528:-
Coord C1 exon
chr2:27230438-27230528
Coord A exon
chr2:27228386-27230437
Coord C2 exon
chr2:27228244-27228385
Length
2052 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CCTCTTTATATTGGTGGCAGGCG
3' ss Score
4.51
Exon sequences
Seq C1 exon
GCATGATGTTGGGTGGTGGCTGTGGACAAGAGCTGGCCCATTGGATTGTGCACGGGCGCCCAGAGAAGGACATGTACAGCTATGACATCAG
Seq A exon
GCAAGTATGGTGGCTGGAGTCAGAAGGCAGGGTAGCTGGTTGGGACAGCAGGACACAGGGGCGAGGGCTGTTTTAGGAAGGAACCTTCCTTGAGACCCAGATGATCTCTTGGAAGTGGAGGCATCAAGGGTGGAAGGGGAGAAGGCAATGGTTGGTAGGTGTCATGGAGGAGCGCCTGGGTTGGGCAGTCCGTAGTCTCTGTGTGTCCAGGATCTCTTGGCCTGGGTCCTACCTGACCCACTATCCACACCAATAGGATTCCATCATTCTATGGCACAGTCTCCTCGGGGAGACTGTGGCTAGGGAGACGGGCCTAGCCAGGATCATTGTTAGTGTGAAGGACCAGGAGCTGAGCTGAGTCTGGTGGCTCTTTCTTCAATCCAAGGCCTGACATGAGTCAGACTCAACACTGGGCAGGCTCTGCCCTATGGTGCAGGACAGTCAGCATGGGCAGGCTGGTGTGGGCACAGAGAATGACTTTGGGTCTGTGTGGAAGCTCTGGGCACTGAACCATATAGCTTGGGCCAAATGCTGATGGCAGGAGCCTGAAGGCATCCTAGGGCTCTATGGCCTGCTGCAAGGGCTCCCAGGCAAGCAGCAGGAGACTGCCATTCTGTCTGACCCAGGCTCCATGACTCATTCATAGAATAGTTTTATTGACCTGTGCAGTATGGTCCGTTGCCGGGGCCATACCAGGCACTGCAAGGCACCATAGGGACTGAGCAGCTGGGCAAGAGACTGTTTCTTGGTCTGTTGTGTCTGCAGTTAGTATGTGCTCTTGGCCAATAGTCCCCTGAAGGAACCCAGCTGCCTGTTGACCTGATACAGGGACACAGTTGGGTGAAGGGACTGCTGGCTCAGCTCAGGATGTCCCACAGCCCTGCCAGCTTGTCTCTTCTTGGCTAGATGAGAACATTGCACCCATGAGGGAGGTGATGTCTGTTGCCACAAAGACAGATGGCCGGCTCTGAAAACCCCAGAATGCCACCCCTACCCAGCTTCTGGCGCTGTGAGGTCTGCTCTATACCCCCTCAGAGACTGTGCAGCCACGCTTAAACTTTCCCTCCTGGAGATGAATGTTCTAGAAATGATACAGCTGCAAGAGGCTTTAGGGAAGGGTCTGTTCATACTCCTCCCACTGCAAAACATAGCGGGATGACCTGCCCTTCTCCAGCTGTGTGGTCAGAGGCACAGGGCCATTCTCAGTGCTACCCCTTCCAGCAGCAAGGACCAGATCAGCTGGGATCATCTGTACCTGTGTAATATACCTGGGGACCCACTGTAGACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAGAAAAACAGAAAGAAGAGAGAGACACAGACACACAGAGGGAGACAGACACACAGAGAGAGCCAGAGGGGGGCAGTGTGAACCAAAGCCTGTCTCTCTTCAGTGCCACCTGTTTATAACTAGGTCAAGGACATAATATGCTTCTCCACCTTCACCGATGAGAGACCCTCAGTAAGGGACATGTGTAGGGCAGCCAGCATTAGGTTCTAGGTGCTTCTAGATCCCACCTGCAAGGGAAGGTCCCTGGGCTTCCTCAGCACCAGGGGCCCCCAGACCACAGCAGATGCTTCTCTTAAAGCAGAGCAAATGGGTCCCATTGTGAAACCACACCCCCAGATGTGTGGCCTTGGGCTACTCCTTCTCTCAGCCACAGTTTCTGCATTTGTAAGATGGAAAGATGGGCCACTCACCTCCCCGGCTGTTGTGGACATATTTAGTCTAAATTCAGGGTAGTATTTAGCATTATAATACATAGCAAAAGACCAAGTCTCAACACCTGGGCATCTTGAGCCCACACATATGGTTGCCTTACCCTACCTGGCAGAGATCGATCATGGACTGGTCTCATGACATCCTTAGCTGTGTTACTTGTGAGAGAGGTGGTTTGTGACTGAGTAAAGAGGCTAACCCTGGCCCAGATTTGGTGCAGGTTGGATCCTTGACAGGTTGTCCACAAGTGGTGATCCATCCTCTTTATATTGGTGGCAG
Seq C2 exon
GCGTTTCCATCACTCGCTCACGGACCACACCCGCTGGATCCGAGAGCGCAGCCATGAGTCCTATGCCAAGAACTACTCGGTTGTCTTCCCACACGATGAGCCACTGGCAGGACGCAACATGAGGAGAGACCCCCTGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009614:ENSMUST00000102886:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(3.9=45.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types