BtaINT0128801 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43249762-43252627:+
Coord C1 exon
chr15:43249762-43249875
Coord A exon
chr15:43249876-43252549
Coord C2 exon
chr15:43252550-43252627
Length
2674 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGA
5' ss Score
5.24
3' ss Seq
ACAGAGCTTCTTTGCTTTAGATT
3' ss Score
5.24
Exon sequences
Seq C1 exon
TTAGATGTAATCATAGCTGACTTGGATGGAGGCACTATTAAAATTCCTGAATGTATTCACCTCTCTTCCCTTCCGGAACCACTTCTACAACAGACTCAAGCAGCTCTTTCTTTG
Seq A exon
GTATGATATATTCTTTCTTAATTTACTTAATTTCTTGAAGTATTTTTCTCTTGATTTAAATCTAAACTAAGGTAATTGGACATCATTCATTGACAGTGTAATTACTTAAAAACGAGAGTTATATGTTCTTAAAATATATAGATGTATTCTCATATAGTGTTGGAATAGGATAATTTACAAAATATTATCTAAAGAGTATACTTTGAATCCTAAGTGAATATTTGTTCTAGGTATTAGAAACACACCTCTGAAAATAAGACCAGACTATGCCTCAAAATCCTTGATTCTCCTAACTTCCCTCATTATAAGCTAGCACCTGTCCCCTTTCCTTCACCTTTCTTAATGACATCTCACTTCTCTTTGGTAGATGTGCTTCTTGCAAAGCAGTGCGATAAGGACTGGCCAGTGTTTCCAGCTTACTACGAAAAGATGTAACTTATTGATAAATGTCTAGTATTCTGTGCATTGAAGCTGTAAGAAATCTTGTGATCTGAGTTTTTCTCATTGAAGCAAATTTATTTTTTGTCAACCTTTGTTTATTTTTAAAAGCACAAGGCACAGTATTGTATTTTACCGACATTTTAGTTGCCCACTTACCCATCATCAGAAATTTGAAACTTAGAAATTCTTCATTCCCTTTCAAGCTATTACTTAAATTAAGGCTTTCATATTCTTCTTGAATGGTATTCCAGTCTGAGCTGTTTAAAATCTTTTTCCCCCTTAAATAGGAACTTAGATAGGAACTCAGAAGTCTAGGATTACCAAGAGGGGTTTTATTTTCAGAAATTTCCAAATTTGTGTTGGTCCTTGTGTTGTTATAGTGGTATGTAGGATGGGAACTCTTAGAGAAGACTGACTTGTTCCCACTATAATTTGTAATCTGGAATACCAGGTGTGATAGAGTAAAAAGCATACTAGGTTAGAACTTACGAGACCTAAATTCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTAAACAATTGCACAGGCGGTATATGGATATAGCAAAAGCTAAGACTGTAGTATTTGAGTGACTGAAAAAGTTTTATGTTTCTAGAAATATTAAATAAGTTTAAAAATATTAATGTTCATTTACTTAATGATAGTTTTACTTACTCAGGGATTAAGTACCAAAATTAACAAAGGTTAAGATTTTAGTTCTTGTCAGTGGCTTTTGGTAGAGGTTTTGCTGCACCCTGTTAAACCTTAACCTTCAACACTTGTGCCACCAAACTTGACAATGAGTACAATTCAGAGTTGATGAAACTGAGTATGTCTATTTATGCAGTTTTCAAACACTTTGTTGGATCATATACTACAGTGTACATAAGTGTATAAGACTAAAAAGATATCATATTTGATGGACTGTGTGGGAGATTTGACATACAAGTATGTCAGCTTCATTTGGTCAGTAAATAATTATAATCTGATGGTTACACAGTGTAATAATCAGGGACATTTTTATAGACATGAAGATGTTATTATACTGTGATAATGATTTGATGACTAGATTATAAATATTATTGATATTTTGGTGTCTTTCATAAGTATTGTTTTGAGCTTTTTGGTCTATAATACCAAATCTTCAGTATTTGAAAGTGATTCTGCAAAGACAAAAATTTGCTGCTTACTGATGCAGAATTATTTTCCCTGTGTAAGCCCTGCATGGATGTGTCTTTCCCACGTGCCCCCTCAGCCTGCCTTCCTTTAAAGCCTAACACAAATGTTGCCTTCTTTTTTTGACTTTCTCTAGGTTGAATTAATTATACTTTATATTCACATATTATTATTTTATGTATTTATAATACTTGTCACATTGTGTTATACTGTCACCCCTCTGGACTGGGAGGTTCACAAACTTATTCTGTTTCTTCTCAGTATTTTAATTAATTAATTTTTAATTATATTTAAAAAACATAAAAATAAATGCTTTAGATTTTCAACTGTATAGATAAATAGCTCTGCCCTAGACCATTCTCTCTCTTAGGTGACTACTATTTTATATTTTAGTGTGTATTTCAGAACTTTACATTTTCATTTATATGTTTATCATATAAATGAAATATGTGTATATGATATATACTACTATATATAGTAGTAGCTTGGTATTTGGCTGGTAATACTGGTAGCTCGGTATTCAGCTTCCCTGTCAGCTCAGCTGGTGAAGAATCTGCCTGCAATGCAGGAGACCCCAGTTTGATTCTCAGGTCAGGAAGATCCCCTGGAGGAGGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCCCTTGGTGGCTCAGCTGGTAAAGAATCCACCTGCAATGTGGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGATCGGCTATATTCAAATAAATGAAACCAAACTATGTGTGTTTCCCTGTAACGGGTATTTTAATTGAATATTTTTTTCTTGAATATCTTTTTGCATAGTACATGCAGAGCTGCCTCAGCTAATGTATTTCATGGAGGGAATGAATATATTGTAATTCACATACTGAGACTGTTTCATCTTAATGCCACCAGTAGATCAAATAATAGGTTTTATTGGTATTTTACGTAACAGAGCTTCTTTGCTTTAG
Seq C2 exon
ATTCTACACCCAGATTTGGAAGTAGCAGATCATGCTTTTCCCCCTCCACGAACAGCTTTATCCCACTCAAAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981:ENSBTAT00000039913:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(5.5=26.3)
A:
NA
C2:
PF0345514=dDENN=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development